miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28077 5' -54.4 NC_005887.1 + 33979 0.67 0.625656
Target:  5'- -cGCGCUCUGCGUcaggcuuucgcagGC-UUCGGcCGCCa -3'
miRNA:   3'- caUGCGGGACGUA-------------CGcAAGCUaGCGG- -5'
28077 5' -54.4 NC_005887.1 + 37333 0.67 0.615509
Target:  5'- -aGCGCCg-GCAcugGCa-UCGGUCGCCg -3'
miRNA:   3'- caUGCGGgaCGUa--CGcaAGCUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 30155 0.68 0.593014
Target:  5'- -gGCGCCgaUGCcgGCG-UCGAagUCGCg -3'
miRNA:   3'- caUGCGGg-ACGuaCGCaAGCU--AGCGg -5'
28077 5' -54.4 NC_005887.1 + 27210 0.68 0.593014
Target:  5'- -aGCG-CCUGCAUGgGgUCGGUCGgguCCg -3'
miRNA:   3'- caUGCgGGACGUACgCaAGCUAGC---GG- -5'
28077 5' -54.4 NC_005887.1 + 41248 0.68 0.581813
Target:  5'- -cACGCaCCUGCucgGCG-UCGGcaauggCGCCg -3'
miRNA:   3'- caUGCG-GGACGua-CGCaAGCUa-----GCGG- -5'
28077 5' -54.4 NC_005887.1 + 40343 0.68 0.570657
Target:  5'- --uUGCCCUGCAUGCcg-CGcUCGUa -3'
miRNA:   3'- cauGCGGGACGUACGcaaGCuAGCGg -5'
28077 5' -54.4 NC_005887.1 + 36525 0.68 0.570657
Target:  5'- --uCGCCCUucGCGacccGCGccgacUCGAUCGCCg -3'
miRNA:   3'- cauGCGGGA--CGUa---CGCa----AGCUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 40741 0.68 0.570657
Target:  5'- --cCGCCC-GCGU-CGaggCGAUCGCCg -3'
miRNA:   3'- cauGCGGGaCGUAcGCaa-GCUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 31176 0.68 0.570657
Target:  5'- -cGCGCCaCUugugcucggGCAUGCGcgcguagauUUCGggCGCCg -3'
miRNA:   3'- caUGCGG-GA---------CGUACGC---------AAGCuaGCGG- -5'
28077 5' -54.4 NC_005887.1 + 29790 0.68 0.559554
Target:  5'- aUGCGCa-UGCcgGCGgccgUCGA-CGCCa -3'
miRNA:   3'- cAUGCGggACGuaCGCa---AGCUaGCGG- -5'
28077 5' -54.4 NC_005887.1 + 17927 0.68 0.548511
Target:  5'- -cGCGaCCUGCGUGCGcaCGAacgagcUCGUCa -3'
miRNA:   3'- caUGCgGGACGUACGCaaGCU------AGCGG- -5'
28077 5' -54.4 NC_005887.1 + 213 0.68 0.548511
Target:  5'- -cGCuGCUCUGCGaaUGCGcgCcagGAUCGCCa -3'
miRNA:   3'- caUG-CGGGACGU--ACGCaaG---CUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 38154 0.69 0.526641
Target:  5'- -cGCGCgCUGCA-GCacUUCGGUCGCg -3'
miRNA:   3'- caUGCGgGACGUaCGc-AAGCUAGCGg -5'
28077 5' -54.4 NC_005887.1 + 7699 0.69 0.524472
Target:  5'- -gGCGCCCgcaaguacgaggGCgAUGUGUUCGAcaUGCCg -3'
miRNA:   3'- caUGCGGGa-----------CG-UACGCAAGCUa-GCGG- -5'
28077 5' -54.4 NC_005887.1 + 40921 0.69 0.515828
Target:  5'- -aACGCCUUccaGCAgcucGCGUUCGucUUGCCg -3'
miRNA:   3'- caUGCGGGA---CGUa---CGCAAGCu-AGCGG- -5'
28077 5' -54.4 NC_005887.1 + 40141 0.69 0.515828
Target:  5'- gGUGCGCgCUGCGcGCcg-CGcUCGCCg -3'
miRNA:   3'- -CAUGCGgGACGUaCGcaaGCuAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 15203 0.69 0.494481
Target:  5'- aGUACGgcggcaaCCUGCAgGCGa-UGAUCGCCg -3'
miRNA:   3'- -CAUGCg------GGACGUaCGCaaGCUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 26052 0.69 0.493424
Target:  5'- -gGCGUCCUGCGUguucaagGCGUgcucaucgUCGAUCuGCUg -3'
miRNA:   3'- caUGCGGGACGUA-------CGCA--------AGCUAG-CGG- -5'
28077 5' -54.4 NC_005887.1 + 32746 0.7 0.473545
Target:  5'- -gGCGCUC-GCGUGCGcgccggCGcgCGCCa -3'
miRNA:   3'- caUGCGGGaCGUACGCaa----GCuaGCGG- -5'
28077 5' -54.4 NC_005887.1 + 37687 0.7 0.463246
Target:  5'- --cCGCCCcGCAUGCaagCGA-CGCCg -3'
miRNA:   3'- cauGCGGGaCGUACGcaaGCUaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.