Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28079 | 5' | -55.1 | NC_005887.1 | + | 2483 | 0.68 | 0.488837 |
Target: 5'- gAUGCGCGAGgCGCucAGCGgUGAGc- -3' miRNA: 3'- gUACGCGUUCgGCGc-UCGCgACUUua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 1419 | 0.69 | 0.388044 |
Target: 5'- --aGCgGCAAGacgaaCGCGAGCuGCUGGAAg -3' miRNA: 3'- guaCG-CGUUCg----GCGCUCG-CGACUUUa -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 1080 | 0.67 | 0.510469 |
Target: 5'- cCGUGCGCAGGUCGaCG-GCGCc----- -3' miRNA: 3'- -GUACGCGUUCGGC-GCuCGCGacuuua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 918 | 0.69 | 0.416855 |
Target: 5'- --aGCGCAuAGCCcaCGAgGCGCUGGAAg -3' miRNA: 3'- guaCGCGU-UCGGc-GCU-CGCGACUUUa -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 340 | 0.71 | 0.317879 |
Target: 5'- aGUGCGCGAGCCGuCGcauguGCGCggUGAGc- -3' miRNA: 3'- gUACGCGUUCGGC-GCu----CGCG--ACUUua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 164 | 0.67 | 0.543629 |
Target: 5'- aAUGCGaCGAGCCaGCGcGCGC-GAAu- -3' miRNA: 3'- gUACGC-GUUCGG-CGCuCGCGaCUUua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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