miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28079 5' -55.1 NC_005887.1 + 24736 0.73 0.244181
Target:  5'- uCGUGCGCAGcguuuccaucuuGCgCGCGAGCGCgGGAu- -3'
miRNA:   3'- -GUACGCGUU------------CG-GCGCUCGCGaCUUua -5'
28079 5' -55.1 NC_005887.1 + 16276 0.78 0.097944
Target:  5'- --cGCGCGGGCCGCuGAcGCGCUGAc-- -3'
miRNA:   3'- guaCGCGUUCGGCG-CU-CGCGACUuua -5'
28079 5' -55.1 NC_005887.1 + 18410 0.73 0.237649
Target:  5'- gCGUGCGCAgacGGCCGCGAG-GCcGAc-- -3'
miRNA:   3'- -GUACGCGU---UCGGCGCUCgCGaCUuua -5'
28079 5' -55.1 NC_005887.1 + 8085 1.05 0.001114
Target:  5'- gCAUGCGCAAGCCGCGAGCGCUGAAAUc -3'
miRNA:   3'- -GUACGCGUUCGGCGCUCGCGACUUUA- -5'
28079 5' -55.1 NC_005887.1 + 1080 0.67 0.510469
Target:  5'- cCGUGCGCAGGUCGaCG-GCGCc----- -3'
miRNA:   3'- -GUACGCGUUCGGC-GCuCGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 26712 0.69 0.407106
Target:  5'- --cGCGC-GGCCGCGGGCaGCUcGAc-- -3'
miRNA:   3'- guaCGCGuUCGGCGCUCG-CGA-CUuua -5'
28079 5' -55.1 NC_005887.1 + 1419 0.69 0.388044
Target:  5'- --aGCgGCAAGacgaaCGCGAGCuGCUGGAAg -3'
miRNA:   3'- guaCG-CGUUCg----GCGCUCG-CGACUUUa -5'
28079 5' -55.1 NC_005887.1 + 14994 0.71 0.325275
Target:  5'- --cGCGCAGGCCGCaggcgugccgcccGAgcugaugcucGCGCUGAAGa -3'
miRNA:   3'- guaCGCGUUCGGCG-------------CU----------CGCGACUUUa -5'
28079 5' -55.1 NC_005887.1 + 11386 0.72 0.250862
Target:  5'- --aGCGCA-GCCG-GAGCGCUGGc-- -3'
miRNA:   3'- guaCGCGUuCGGCgCUCGCGACUuua -5'
28079 5' -55.1 NC_005887.1 + 24954 0.67 0.499601
Target:  5'- --cGCGCGGGCCGCcuuGCGCg----- -3'
miRNA:   3'- guaCGCGUUCGGCGcu-CGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 12948 0.67 0.53249
Target:  5'- --cGCaGCAAGCCGCGA-CGCUa---- -3'
miRNA:   3'- guaCG-CGUUCGGCGCUcGCGAcuuua -5'
28079 5' -55.1 NC_005887.1 + 24429 0.67 0.543629
Target:  5'- uCGUGCGCAcgcaGGUCGCGAGCag-GAc-- -3'
miRNA:   3'- -GUACGCGU----UCGGCGCUCGcgaCUuua -5'
28079 5' -55.1 NC_005887.1 + 11630 0.66 0.60028
Target:  5'- gCGUGCGCAAuGCCGagcuCGAcGCGUUGcAGAc -3'
miRNA:   3'- -GUACGCGUU-CGGC----GCU-CGCGAC-UUUa -5'
28079 5' -55.1 NC_005887.1 + 38230 0.66 0.599136
Target:  5'- -uUGCGCGuGGCCGggaugguCGAGCGCUcGAu-- -3'
miRNA:   3'- guACGCGU-UCGGC-------GCUCGCGA-CUuua -5'
28079 5' -55.1 NC_005887.1 + 5827 0.66 0.588852
Target:  5'- gUcgGCGCGGGUCGCGaAGgGC-GAAGc -3'
miRNA:   3'- -GuaCGCGUUCGGCGC-UCgCGaCUUUa -5'
28079 5' -55.1 NC_005887.1 + 18144 0.66 0.577463
Target:  5'- --aGCGCGGGCCGCcGAcgucGUGCcGAAGc -3'
miRNA:   3'- guaCGCGUUCGGCG-CU----CGCGaCUUUa -5'
28079 5' -55.1 NC_005887.1 + 22977 0.66 0.611738
Target:  5'- -cUGCGCGAGCauggCGCGuuGCcGCUGAu-- -3'
miRNA:   3'- guACGCGUUCG----GCGCu-CG-CGACUuua -5'
28079 5' -55.1 NC_005887.1 + 4592 0.66 0.577463
Target:  5'- --gGCGCAGGCCGCGcAGaUGCa----- -3'
miRNA:   3'- guaCGCGUUCGGCGC-UC-GCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 7213 0.66 0.554843
Target:  5'- gCGUGCGCAGGCgcugucggCGuCGGGCGCa----- -3'
miRNA:   3'- -GUACGCGUUCG--------GC-GCUCGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 37008 0.67 0.548106
Target:  5'- --cGCGCAGGCCGUacgcgaacacgucggGAuacuggucgGCGCUGAGc- -3'
miRNA:   3'- guaCGCGUUCGGCG---------------CU---------CGCGACUUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.