Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2808 | 3' | -51.9 | NC_001491.2 | + | 15777 | 0.66 | 0.981478 |
Target: 5'- --gGGCGgUGCaaaGUCCGCGCGAg-- -3' miRNA: 3'- aaaUCGCaACGag-UAGGUGCGCUgag -5' |
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2808 | 3' | -51.9 | NC_001491.2 | + | 146254 | 0.67 | 0.968183 |
Target: 5'- -gUAGCGgcgGCUCAUggccaCCAgGCGGC-Cg -3' miRNA: 3'- aaAUCGCaa-CGAGUA-----GGUgCGCUGaG- -5' |
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2808 | 3' | -51.9 | NC_001491.2 | + | 38670 | 0.67 | 0.957533 |
Target: 5'- --aGGCGUuugUGCgCGUCgCGCGCGcCUCc -3' miRNA: 3'- aaaUCGCA---ACGaGUAG-GUGCGCuGAG- -5' |
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2808 | 3' | -51.9 | NC_001491.2 | + | 34494 | 0.69 | 0.905598 |
Target: 5'- -cUGGCG-UGCUCggCCACGCG-Cg- -3' miRNA: 3'- aaAUCGCaACGAGuaGGUGCGCuGag -5' |
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2808 | 3' | -51.9 | NC_001491.2 | + | 6620 | 0.69 | 0.905598 |
Target: 5'- --aAGCGUcucUGCg---CCGCGUGGCUCu -3' miRNA: 3'- aaaUCGCA---ACGaguaGGUGCGCUGAG- -5' |
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2808 | 3' | -51.9 | NC_001491.2 | + | 58471 | 0.7 | 0.884968 |
Target: 5'- gUUGGUGgacguaaacgUGCcCGUCCACGCGGC-Cg -3' miRNA: 3'- aAAUCGCa---------ACGaGUAGGUGCGCUGaG- -5' |
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2808 | 3' | -51.9 | NC_001491.2 | + | 13327 | 0.75 | 0.60487 |
Target: 5'- ---cGCGUgUGCggCAgCCACGCGACUCa -3' miRNA: 3'- aaauCGCA-ACGa-GUaGGUGCGCUGAG- -5' |
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2808 | 3' | -51.9 | NC_001491.2 | + | 80833 | 0.9 | 0.099036 |
Target: 5'- gUUAGCGUguuCUCAUCCGCGCGGCUCu -3' miRNA: 3'- aAAUCGCAac-GAGUAGGUGCGCUGAG- -5' |
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2808 | 3' | -51.9 | NC_001491.2 | + | 140601 | 1.08 | 0.006149 |
Target: 5'- gUUUAGCGUUGCUCAUCCACGCGACUCg -3' miRNA: 3'- -AAAUCGCAACGAGUAGGUGCGCUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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