miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28080 3' -51.2 NC_005887.1 + 14507 0.7 0.592657
Target:  5'- gCGGUGCUUGGugguccgcuugcAGGCgcggCCGuCGGCGGCg -3'
miRNA:   3'- -GCUACGAGCU------------UUCGaa--GGC-GUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 14847 0.69 0.650899
Target:  5'- ---cGUUCGcgGGCgugcacaCCGCAGCAACa -3'
miRNA:   3'- gcuaCGAGCuuUCGaa-----GGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 34799 0.69 0.650899
Target:  5'- uCGAguUGCUgCGGAAGCUUUCG-AGCAucGCg -3'
miRNA:   3'- -GCU--ACGA-GCUUUCGAAGGCgUCGU--UG- -5'
28080 3' -51.2 NC_005887.1 + 33439 0.69 0.674142
Target:  5'- aCGAUcCUCGAcGAGCUUCgCGUAGcCGAUg -3'
miRNA:   3'- -GCUAcGAGCU-UUCGAAG-GCGUC-GUUG- -5'
28080 3' -51.2 NC_005887.1 + 11112 0.68 0.697207
Target:  5'- uGGUGCgCGcGAAGCUggccgaggcgCCGUGGCGGCg -3'
miRNA:   3'- gCUACGaGC-UUUCGAa---------GGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 19334 0.68 0.697207
Target:  5'- aGgcGCUCGAuAAGCUgaccaugcUCgCGCAGCAGa -3'
miRNA:   3'- gCuaCGAGCU-UUCGA--------AG-GCGUCGUUg -5'
28080 3' -51.2 NC_005887.1 + 40954 0.68 0.697207
Target:  5'- gCGcAUGCUCGAccGCUUCgGC-GCGGg -3'
miRNA:   3'- -GC-UACGAGCUuuCGAAGgCGuCGUUg -5'
28080 3' -51.2 NC_005887.1 + 22409 0.67 0.795925
Target:  5'- uCGAaGCgccaCGGAGGCUgacaCCggGCGGCAGCg -3'
miRNA:   3'- -GCUaCGa---GCUUUCGAa---GG--CGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 34509 0.67 0.764268
Target:  5'- -cAUGCUCGAcguGCUgUCGCuGCGACc -3'
miRNA:   3'- gcUACGAGCUuu-CGAaGGCGuCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 37098 0.68 0.742378
Target:  5'- aGGUGCgagCGAcaugucGGUgaUCUGCAGCGACa -3'
miRNA:   3'- gCUACGa--GCUu-----UCGa-AGGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 40229 0.68 0.731239
Target:  5'- aCGA-GCUCGAAcGGCUUgCaguGCAGCGAa -3'
miRNA:   3'- -GCUaCGAGCUU-UCGAAgG---CGUCGUUg -5'
28080 3' -51.2 NC_005887.1 + 31264 0.68 0.719988
Target:  5'- cCGAUGCgccacgCGGAAucGUUUgaGCAGCGGCg -3'
miRNA:   3'- -GCUACGa-----GCUUU--CGAAggCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 19385 0.66 0.806111
Target:  5'- -cAUGCUCGcgcAGCUgCCGCAG-AGCg -3'
miRNA:   3'- gcUACGAGCuu-UCGAaGGCGUCgUUG- -5'
28080 3' -51.2 NC_005887.1 + 8384 0.66 0.835391
Target:  5'- cCGGUGCU-GAcGGacgCCGCAcGCGACg -3'
miRNA:   3'- -GCUACGAgCUuUCgaaGGCGU-CGUUG- -5'
28080 3' -51.2 NC_005887.1 + 28925 0.66 0.835391
Target:  5'- gCGGUGCgcc---GCUcgUCGCAGCAGCg -3'
miRNA:   3'- -GCUACGagcuuuCGAa-GGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 39416 0.66 0.835391
Target:  5'- gCGGUGCcgCGGc-GCUUgCGCAGCuuGGCg -3'
miRNA:   3'- -GCUACGa-GCUuuCGAAgGCGUCG--UUG- -5'
28080 3' -51.2 NC_005887.1 + 7011 0.66 0.844686
Target:  5'- uGAaGCUCGu-GGCcggCCGCcGCGGCg -3'
miRNA:   3'- gCUaCGAGCuuUCGaa-GGCGuCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 14678 0.66 0.844686
Target:  5'- uGAUGCagaCGAucAAGCcgcgCgCGCGGCAGCu -3'
miRNA:   3'- gCUACGa--GCU--UUCGaa--G-GCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 38401 0.66 0.844686
Target:  5'- gGcgGgUCGAcGAGCUUCUGCGcGCcGCg -3'
miRNA:   3'- gCuaCgAGCU-UUCGAAGGCGU-CGuUG- -5'
28080 3' -51.2 NC_005887.1 + 7546 1.1 0.001349
Target:  5'- gCGAUGCUCGAAAGCUUCCGCAGCAACu -3'
miRNA:   3'- -GCUACGAGCUUUCGAAGGCGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.