miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28080 5' -53.5 NC_005887.1 + 6429 0.66 0.76706
Target:  5'- gUGUgGCCGGAcggccGCGccgagaucgaagugcGCGACCUGAAGu -3'
miRNA:   3'- gACGaUGGUCU-----UGC---------------CGCUGGACUUCc -5'
28080 5' -53.5 NC_005887.1 + 13200 0.66 0.762874
Target:  5'- -cGCUACUAccuGAACGGCGugUUcaucGAGGc -3'
miRNA:   3'- gaCGAUGGU---CUUGCCGCugGAc---UUCC- -5'
28080 5' -53.5 NC_005887.1 + 10527 0.66 0.741618
Target:  5'- ------aCGGGGCGGCGGCaaGAAGGg -3'
miRNA:   3'- gacgaugGUCUUGCCGCUGgaCUUCC- -5'
28080 5' -53.5 NC_005887.1 + 27972 0.66 0.730808
Target:  5'- -cGCgcgcGCC-GAGCGGCGACUcGAacAGGu -3'
miRNA:   3'- gaCGa---UGGuCUUGCCGCUGGaCU--UCC- -5'
28080 5' -53.5 NC_005887.1 + 1612 0.66 0.719894
Target:  5'- -gGCgaucGCCucgacgcGGGCGGCGACCUcGAAGu -3'
miRNA:   3'- gaCGa---UGGu------CUUGCCGCUGGA-CUUCc -5'
28080 5' -53.5 NC_005887.1 + 17328 0.66 0.719894
Target:  5'- -cGCUACCGGcuggcCGGCGGCCgcc-GGc -3'
miRNA:   3'- gaCGAUGGUCuu---GCCGCUGGacuuCC- -5'
28080 5' -53.5 NC_005887.1 + 36072 0.67 0.708889
Target:  5'- gUGCgaACCGacguGCGGUGGCCUGucGGu -3'
miRNA:   3'- gACGa-UGGUcu--UGCCGCUGGACuuCC- -5'
28080 5' -53.5 NC_005887.1 + 12352 0.67 0.664191
Target:  5'- -cGCcgGCCAG-GCGGUGACgUGGcAGGc -3'
miRNA:   3'- gaCGa-UGGUCuUGCCGCUGgACU-UCC- -5'
28080 5' -53.5 NC_005887.1 + 20489 0.67 0.664191
Target:  5'- -gGCUGCuCAGGGCGGCGugUUuGAc-- -3'
miRNA:   3'- gaCGAUG-GUCUUGCCGCugGA-CUucc -5'
28080 5' -53.5 NC_005887.1 + 18893 0.68 0.630294
Target:  5'- -gGCUGCCGGGcuuccgguggaaGCGGCGGgaUGgcGGg -3'
miRNA:   3'- gaCGAUGGUCU------------UGCCGCUggACuuCC- -5'
28080 5' -53.5 NC_005887.1 + 23456 0.68 0.596409
Target:  5'- -gGCUGCCGGuGCcgGGCGACCaGAAa- -3'
miRNA:   3'- gaCGAUGGUCuUG--CCGCUGGaCUUcc -5'
28080 5' -53.5 NC_005887.1 + 22065 0.69 0.573963
Target:  5'- -gGCUgaacccacaACCAGcACGGCGGCCgucGGGg -3'
miRNA:   3'- gaCGA---------UGGUCuUGCCGCUGGacuUCC- -5'
28080 5' -53.5 NC_005887.1 + 576 0.7 0.518873
Target:  5'- -cGCcgGCCAGAugGGCGAUgaGAAc- -3'
miRNA:   3'- gaCGa-UGGUCUugCCGCUGgaCUUcc -5'
28080 5' -53.5 NC_005887.1 + 4676 0.7 0.486829
Target:  5'- -cGCUGCgCAG-ACGGCGAgggUCUGAuGGg -3'
miRNA:   3'- gaCGAUG-GUCuUGCCGCU---GGACUuCC- -5'
28080 5' -53.5 NC_005887.1 + 10791 0.71 0.442622
Target:  5'- uCUGCUACCAGAAcgaccaaccguugcCGGUGACgCUGcucGGc -3'
miRNA:   3'- -GACGAUGGUCUU--------------GCCGCUG-GACuu-CC- -5'
28080 5' -53.5 NC_005887.1 + 30252 0.73 0.351929
Target:  5'- uCUGCgcgGCCAGcacguCGGUGACCUGAc-- -3'
miRNA:   3'- -GACGa--UGGUCuu---GCCGCUGGACUucc -5'
28080 5' -53.5 NC_005887.1 + 7583 1.11 0.000818
Target:  5'- uCUGCUACCAGAACGGCGACCUGAAGGa -3'
miRNA:   3'- -GACGAUGGUCUUGCCGCUGGACUUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.