Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28081 | 3' | -61.4 | NC_005887.1 | + | 7213 | 1.08 | 0.000255 |
Target: 5'- cCGCCCGUCCGUGGCGCCGGAUUCCGAu -3' miRNA: 3'- -GCGGGCAGGCACCGCGGCCUAAGGCU- -5' |
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28081 | 3' | -61.4 | NC_005887.1 | + | 4618 | 0.71 | 0.179501 |
Target: 5'- uGCUCG-CCGcGGCGCCGGuggccgCCGGc -3' miRNA: 3'- gCGGGCaGGCaCCGCGGCCuaa---GGCU- -5' |
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28081 | 3' | -61.4 | NC_005887.1 | + | 12210 | 0.7 | 0.215135 |
Target: 5'- gCGCCgCG-CCGgGcGCGCCGGAUUUCa- -3' miRNA: 3'- -GCGG-GCaGGCaC-CGCGGCCUAAGGcu -5' |
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28081 | 3' | -61.4 | NC_005887.1 | + | 20701 | 0.67 | 0.319418 |
Target: 5'- aCGCCCGUCagauugGUcGGCGUCGGGUaUUCa- -3' miRNA: 3'- -GCGGGCAGg-----CA-CCGCGGCCUA-AGGcu -5' |
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28081 | 3' | -61.4 | NC_005887.1 | + | 6991 | 0.67 | 0.335623 |
Target: 5'- gGCCCG--CGUGGUGCCGGGcgugaagcucguggCCGGc -3' miRNA: 3'- gCGGGCagGCACCGCGGCCUaa------------GGCU- -5' |
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28081 | 3' | -61.4 | NC_005887.1 | + | 10988 | 0.66 | 0.349984 |
Target: 5'- aCGCUCGUCgaggauggCGUGGUGCuCGGGUgcggcggUCUGGu -3' miRNA: 3'- -GCGGGCAG--------GCACCGCG-GCCUA-------AGGCU- -5' |
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28081 | 3' | -61.4 | NC_005887.1 | + | 12850 | 0.66 | 0.358974 |
Target: 5'- gCGCCCG-CCGUcgaGGcCGCCGGcua-CGAc -3' miRNA: 3'- -GCGGGCaGGCA---CC-GCGGCCuaagGCU- -5' |
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28081 | 3' | -61.4 | NC_005887.1 | + | 40875 | 0.66 | 0.358974 |
Target: 5'- aGCgCCGcacgCCGUcGGCGUCGGGcUCCu- -3' miRNA: 3'- gCG-GGCa---GGCA-CCGCGGCCUaAGGcu -5' |
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28081 | 3' | -61.4 | NC_005887.1 | + | 15497 | 0.66 | 0.375728 |
Target: 5'- cCGCgCGUCagaUGGaCGCCGGccaguUUCCGGa -3' miRNA: 3'- -GCGgGCAGgc-ACC-GCGGCCu----AAGGCU- -5' |
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28081 | 3' | -61.4 | NC_005887.1 | + | 8114 | 0.66 | 0.3843 |
Target: 5'- gCGCUCG-CCGaGGCGCCGcugUUCGGg -3' miRNA: 3'- -GCGGGCaGGCaCCGCGGCcuaAGGCU- -5' |
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28081 | 3' | -61.4 | NC_005887.1 | + | 20877 | 0.66 | 0.3843 |
Target: 5'- gGCCUGaaugauaGUGGCGCCGGcgUgUCGAa -3' miRNA: 3'- gCGGGCagg----CACCGCGGCCuaA-GGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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