Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28081 | 5' | -49.4 | NC_005887.1 | + | 26271 | 0.77 | 0.415024 |
Target: 5'- uCCUCGAGGUUCcACCaguGgCCGAAGACc -3' miRNA: 3'- -GGAGCUUUAAGuUGG---CgGGCUUCUGc -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 7947 | 0.66 | 0.944862 |
Target: 5'- -gUCGGAAUcugUAACCGCgCGcuGACGa -3' miRNA: 3'- ggAGCUUUAa--GUUGGCGgGCuuCUGC- -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 6445 | 0.66 | 0.934281 |
Target: 5'- aCCgCGgcAUUCcguCUGUCCGAAGACc -3' miRNA: 3'- -GGaGCuuUAAGuu-GGCGGGCUUCUGc -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 39145 | 0.66 | 0.934281 |
Target: 5'- uUUCGAg---CGGCCGCUcucccauuCGGAGACGg -3' miRNA: 3'- gGAGCUuuaaGUUGGCGG--------GCUUCUGC- -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 5748 | 0.66 | 0.934281 |
Target: 5'- --cCGGGAUUcCGGCCgagGCCgCGAAGGCGc -3' miRNA: 3'- ggaGCUUUAA-GUUGG---CGG-GCUUCUGC- -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 28960 | 0.67 | 0.922498 |
Target: 5'- uCCUCGAc-UUCgAGCCGgaCGAAGugGa -3' miRNA: 3'- -GGAGCUuuAAG-UUGGCggGCUUCugC- -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 4458 | 0.67 | 0.916154 |
Target: 5'- gUCUCGcAGUUCGACCcggcuGCCgCGAAGGu- -3' miRNA: 3'- -GGAGCuUUAAGUUGG-----CGG-GCUUCUgc -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 3170 | 0.67 | 0.909511 |
Target: 5'- gCCUCGAcaAGUUCGggcaGCUGCCgCGcccGGACa -3' miRNA: 3'- -GGAGCU--UUAAGU----UGGCGG-GCu--UCUGc -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 2898 | 0.68 | 0.863552 |
Target: 5'- --aCGGAcacgUCGGCCGCCgCGAAcGACGc -3' miRNA: 3'- ggaGCUUua--AGUUGGCGG-GCUU-CUGC- -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 375 | 0.69 | 0.840609 |
Target: 5'- uCCUCGAucucuggugcgaaaaGAcgggCAAgCGCCgCGAAGACGc -3' miRNA: 3'- -GGAGCU---------------UUaa--GUUgGCGG-GCUUCUGC- -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 40729 | 0.75 | 0.530509 |
Target: 5'- aCUUCGAGGUc--GCCGCCCGcgucGAGGCGa -3' miRNA: 3'- -GGAGCUUUAaguUGGCGGGC----UUCUGC- -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 40794 | 0.72 | 0.689947 |
Target: 5'- -gUCGAGGUUCGuggcggcgacgcGCCGCUCGAcgauGACGa -3' miRNA: 3'- ggAGCUUUAAGU------------UGGCGGGCUu---CUGC- -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 5365 | 0.71 | 0.712497 |
Target: 5'- --cCGcAAAUUcCGACUGCUCGAAGGCGa -3' miRNA: 3'- ggaGC-UUUAA-GUUGGCGGGCUUCUGC- -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 1771 | 0.71 | 0.731399 |
Target: 5'- uCCUCGAcaugcucgaccugcGcgUCGGCCGCuacCCGAAGgACGu -3' miRNA: 3'- -GGAGCU--------------UuaAGUUGGCG---GGCUUC-UGC- -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 8462 | 0.7 | 0.798207 |
Target: 5'- -aUCGAGcgcccggcgCAACCGCUCGgcGACGa -3' miRNA: 3'- ggAGCUUuaa------GUUGGCGGGCuuCUGC- -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 4941 | 0.69 | 0.815079 |
Target: 5'- uCCUCGGGAUggaagacgcgcagcUCAACUcCCUGAAGgACGa -3' miRNA: 3'- -GGAGCUUUA--------------AGUUGGcGGGCUUC-UGC- -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 7251 | 1.13 | 0.002123 |
Target: 5'- cCCUCGAAAUUCAACCGCCCGAAGACGa -3' miRNA: 3'- -GGAGCUUUAAGUUGGCGGGCUUCUGC- -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 19148 | 0.66 | 0.934281 |
Target: 5'- cCCUUGAAGU--AGCCGCCCccGGcCGu -3' miRNA: 3'- -GGAGCUUUAagUUGGCGGGcuUCuGC- -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 17389 | 0.67 | 0.92854 |
Target: 5'- cCCUCG-----CGGCCGCgCGcAAGGCGg -3' miRNA: 3'- -GGAGCuuuaaGUUGGCGgGC-UUCUGC- -5' |
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28081 | 5' | -49.4 | NC_005887.1 | + | 14891 | 0.67 | 0.92854 |
Target: 5'- gCUCGAGAUUCcg-CGCUCGAAcguGugGg -3' miRNA: 3'- gGAGCUUUAAGuugGCGGGCUU---CugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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