miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28081 5' -49.4 NC_005887.1 + 1771 0.71 0.731399
Target:  5'- uCCUCGAcaugcucgaccugcGcgUCGGCCGCuacCCGAAGgACGu -3'
miRNA:   3'- -GGAGCU--------------UuaAGUUGGCG---GGCUUC-UGC- -5'
28081 5' -49.4 NC_005887.1 + 5811 0.71 0.722539
Target:  5'- gCCUgcCGGAAUUCGcgaaauaccugccGCCGCCCGAugcuGCGg -3'
miRNA:   3'- -GGA--GCUUUAAGU-------------UGGCGGGCUuc--UGC- -5'
28081 5' -49.4 NC_005887.1 + 5365 0.71 0.712497
Target:  5'- --cCGcAAAUUcCGACUGCUCGAAGGCGa -3'
miRNA:   3'- ggaGC-UUUAA-GUUGGCGGGCUUCUGC- -5'
28081 5' -49.4 NC_005887.1 + 38698 0.72 0.701259
Target:  5'- uUCUCGAGcgUCGACUGCauggaCGgcGACa -3'
miRNA:   3'- -GGAGCUUuaAGUUGGCGg----GCuuCUGc -5'
28081 5' -49.4 NC_005887.1 + 40794 0.72 0.689947
Target:  5'- -gUCGAGGUUCGuggcggcgacgcGCCGCUCGAcgauGACGa -3'
miRNA:   3'- ggAGCUUUAAGU------------UGGCGGGCUu---CUGC- -5'
28081 5' -49.4 NC_005887.1 + 20517 0.73 0.632723
Target:  5'- gCCUUGAAuggccguuucAUUCGGCgCGCCCGGcagcgccgcGGACGu -3'
miRNA:   3'- -GGAGCUU----------UAAGUUG-GCGGGCU---------UCUGC- -5'
28081 5' -49.4 NC_005887.1 + 40729 0.75 0.530509
Target:  5'- aCUUCGAGGUc--GCCGCCCGcgucGAGGCGa -3'
miRNA:   3'- -GGAGCUUUAaguUGGCGGGC----UUCUGC- -5'
28081 5' -49.4 NC_005887.1 + 7913 0.75 0.508504
Target:  5'- aCUUCGAGg--CGACCGCuccggaaaCCGAGGACGa -3'
miRNA:   3'- -GGAGCUUuaaGUUGGCG--------GGCUUCUGC- -5'
28081 5' -49.4 NC_005887.1 + 26271 0.77 0.415024
Target:  5'- uCCUCGAGGUUCcACCaguGgCCGAAGACc -3'
miRNA:   3'- -GGAGCUUUAAGuUGG---CgGGCUUCUGc -5'
28081 5' -49.4 NC_005887.1 + 7251 1.13 0.002123
Target:  5'- cCCUCGAAAUUCAACCGCCCGAAGACGa -3'
miRNA:   3'- -GGAGCUUUAAGUUGGCGGGCUUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.