miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28082 5' -51.4 NC_005887.1 + 40219 0.66 0.812915
Target:  5'- cUGCGACUUCAcgAGCUCGaaCGGCUugcagugcagcgaauCCGCa -3'
miRNA:   3'- -AUGUUGAAGU--UCGAGUa-GUCGG---------------GGUG- -5'
28082 5' -51.4 NC_005887.1 + 32589 0.66 0.798608
Target:  5'- cGCAugUUCcAGUgcaCGUgCAGCCCgCACa -3'
miRNA:   3'- aUGUugAAGuUCGa--GUA-GUCGGG-GUG- -5'
28082 5' -51.4 NC_005887.1 + 2880 0.66 0.798608
Target:  5'- gAUAACgcgCAGGCgacgacggacaCGUCGGCCgCCGCg -3'
miRNA:   3'- aUGUUGaa-GUUCGa----------GUAGUCGG-GGUG- -5'
28082 5' -51.4 NC_005887.1 + 22762 0.66 0.788146
Target:  5'- gACGGCUaCAAcguGCUCGUUGGCUCgACg -3'
miRNA:   3'- aUGUUGAaGUU---CGAGUAGUCGGGgUG- -5'
28082 5' -51.4 NC_005887.1 + 12542 0.66 0.788146
Target:  5'- gACAACUUCAAGgaCGUggcgucgaCGGCCgCCGg -3'
miRNA:   3'- aUGUUGAAGUUCgaGUA--------GUCGG-GGUg -5'
28082 5' -51.4 NC_005887.1 + 37568 0.67 0.755694
Target:  5'- cACGGCcUCGccGGCUggCGUCAGCuuCCCGCg -3'
miRNA:   3'- aUGUUGaAGU--UCGA--GUAGUCG--GGGUG- -5'
28082 5' -51.4 NC_005887.1 + 23415 0.67 0.710457
Target:  5'- aGCAGCgcgUCGaucAGCUCGUCgcAGCcgCCCGCc -3'
miRNA:   3'- aUGUUGa--AGU---UCGAGUAG--UCG--GGGUG- -5'
28082 5' -51.4 NC_005887.1 + 30714 0.67 0.710457
Target:  5'- cUGCAACgcgUCGAGCUCGgcauugcgCAcGCUCUGCa -3'
miRNA:   3'- -AUGUUGa--AGUUCGAGUa-------GU-CGGGGUG- -5'
28082 5' -51.4 NC_005887.1 + 19393 0.68 0.687249
Target:  5'- cGCAGCUgccgcaGAGCgUAUCGGUCCUGCg -3'
miRNA:   3'- aUGUUGAag----UUCGaGUAGUCGGGGUG- -5'
28082 5' -51.4 NC_005887.1 + 8492 0.69 0.640211
Target:  5'- -uCGGCUgccgCAGGCUCGUacGCCCUGCa -3'
miRNA:   3'- auGUUGAa---GUUCGAGUAguCGGGGUG- -5'
28082 5' -51.4 NC_005887.1 + 11525 0.69 0.628398
Target:  5'- cGCAACgcggUCAAGCUgAUCAGCagcuCgGCg -3'
miRNA:   3'- aUGUUGa---AGUUCGAgUAGUCGg---GgUG- -5'
28082 5' -51.4 NC_005887.1 + 24198 0.7 0.581301
Target:  5'- aGCAGCUUC-GGCacgaCGUCGGCggCCCGCg -3'
miRNA:   3'- aUGUUGAAGuUCGa---GUAGUCG--GGGUG- -5'
28082 5' -51.4 NC_005887.1 + 6781 0.7 0.546448
Target:  5'- cGCAcgcACUaCAAGUgggaCAUCGGCCUCACg -3'
miRNA:   3'- aUGU---UGAaGUUCGa---GUAGUCGGGGUG- -5'
28082 5' -51.4 NC_005887.1 + 12193 0.71 0.501095
Target:  5'- cGCGACUUCGAcGCcggCAUCGGCgCCgACu -3'
miRNA:   3'- aUGUUGAAGUU-CGa--GUAGUCG-GGgUG- -5'
28082 5' -51.4 NC_005887.1 + 2855 0.73 0.367472
Target:  5'- --gAACUUCcAGUUCGUCAGCCUgGCc -3'
miRNA:   3'- augUUGAAGuUCGAGUAGUCGGGgUG- -5'
28082 5' -51.4 NC_005887.1 + 28183 0.74 0.340297
Target:  5'- aGCAACaUCGGGCUgugcgccgCAUCAGCgCCGCg -3'
miRNA:   3'- aUGUUGaAGUUCGA--------GUAGUCGgGGUG- -5'
28082 5' -51.4 NC_005887.1 + 21864 0.75 0.314606
Target:  5'- gACGACUggcgCAcagcAGCUCAUCAGCacguggCCCGCg -3'
miRNA:   3'- aUGUUGAa---GU----UCGAGUAGUCG------GGGUG- -5'
28082 5' -51.4 NC_005887.1 + 6705 0.75 0.306375
Target:  5'- gACAGCgUCGAGCUCGcaccgcUCAGCCCgaGCg -3'
miRNA:   3'- aUGUUGaAGUUCGAGU------AGUCGGGg-UG- -5'
28082 5' -51.4 NC_005887.1 + 1365 0.76 0.275104
Target:  5'- --aGGCUUCGAGCUCGggcacguacaUCAGgCCCGCg -3'
miRNA:   3'- augUUGAAGUUCGAGU----------AGUCgGGGUG- -5'
28082 5' -51.4 NC_005887.1 + 7108 1.09 0.001243
Target:  5'- gUACAACUUCAAGCUCAUCAGCCCCACg -3'
miRNA:   3'- -AUGUUGAAGUUCGAGUAGUCGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.