miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28083 3' -56.5 NC_005887.1 + 12646 0.66 0.598455
Target:  5'- cGACGCgaCGGCGaguggCUGCGCGUg- -3'
miRNA:   3'- -UUGCGgaGCCGCagua-GAUGCGCAgc -5'
28083 3' -56.5 NC_005887.1 + 39271 0.66 0.597348
Target:  5'- --gGCCguggUCGGCGUUcagcgccugcaggAUCUuCGCGUCGu -3'
miRNA:   3'- uugCGG----AGCCGCAG-------------UAGAuGCGCAGC- -5'
28083 3' -56.5 NC_005887.1 + 25823 0.66 0.587395
Target:  5'- cGCGCCcacUCGGCGcCggCggcgACGCGaUCGg -3'
miRNA:   3'- uUGCGG---AGCCGCaGuaGa---UGCGC-AGC- -5'
28083 3' -56.5 NC_005887.1 + 31383 0.66 0.576373
Target:  5'- cGACGCgCUCGGCGUagcggUGCGUGcCGu -3'
miRNA:   3'- -UUGCG-GAGCCGCAguag-AUGCGCaGC- -5'
28083 3' -56.5 NC_005887.1 + 4488 0.66 0.565399
Target:  5'- -gUGCCgaaCGGCGcgcgCAUC-GCGCGUCu -3'
miRNA:   3'- uuGCGGa--GCCGCa---GUAGaUGCGCAGc -5'
28083 3' -56.5 NC_005887.1 + 26649 0.66 0.554479
Target:  5'- cACGCCggCGGCGgaaUCAUCcggccGCGCGgCGg -3'
miRNA:   3'- uUGCGGa-GCCGC---AGUAGa----UGCGCaGC- -5'
28083 3' -56.5 NC_005887.1 + 34451 0.66 0.554479
Target:  5'- -uCGCCUCGaaGUCGUCUucguuCGCG-CGg -3'
miRNA:   3'- uuGCGGAGCcgCAGUAGAu----GCGCaGC- -5'
28083 3' -56.5 NC_005887.1 + 1478 0.66 0.543622
Target:  5'- cGACGCCgaCGGCGUgCGgcgCUcGCGCGgcgCGg -3'
miRNA:   3'- -UUGCGGa-GCCGCA-GUa--GA-UGCGCa--GC- -5'
28083 3' -56.5 NC_005887.1 + 21446 0.66 0.54254
Target:  5'- cGACGCuCUCaGCGUCGagcacggUCaGCGgGUCGg -3'
miRNA:   3'- -UUGCG-GAGcCGCAGU-------AGaUGCgCAGC- -5'
28083 3' -56.5 NC_005887.1 + 34538 0.67 0.532836
Target:  5'- gGAUGCC-CGGguuCGUCuucGUCUGCGCGUa- -3'
miRNA:   3'- -UUGCGGaGCC---GCAG---UAGAUGCGCAgc -5'
28083 3' -56.5 NC_005887.1 + 32134 0.67 0.522127
Target:  5'- cGCGCCgucCGGCGcgggCAUCgACGCGaCGc -3'
miRNA:   3'- uUGCGGa--GCCGCa---GUAGaUGCGCaGC- -5'
28083 3' -56.5 NC_005887.1 + 33474 0.67 0.511503
Target:  5'- gAGCGCgUaCGGCGUCGcgaUCUcgacggGCGCGcCGg -3'
miRNA:   3'- -UUGCGgA-GCCGCAGU---AGA------UGCGCaGC- -5'
28083 3' -56.5 NC_005887.1 + 900 0.67 0.511503
Target:  5'- aGGCgGCCUCGGCuUCgAUC--CGCGUCGc -3'
miRNA:   3'- -UUG-CGGAGCCGcAG-UAGauGCGCAGC- -5'
28083 3' -56.5 NC_005887.1 + 5762 0.67 0.511503
Target:  5'- -gUGCg-CGGCGUCAUCUAUGCa--- -3'
miRNA:   3'- uuGCGgaGCCGCAGUAGAUGCGcagc -5'
28083 3' -56.5 NC_005887.1 + 27380 0.67 0.490532
Target:  5'- --gGCCUgcgCGGCGUaggCGUCgaguugcgGCGCGUCGu -3'
miRNA:   3'- uugCGGA---GCCGCA---GUAGa-------UGCGCAGC- -5'
28083 3' -56.5 NC_005887.1 + 788 0.67 0.480197
Target:  5'- gAACGUCUCGGCGcuggcugacuUCGcgUGCGCGcCGa -3'
miRNA:   3'- -UUGCGGAGCCGC----------AGUagAUGCGCaGC- -5'
28083 3' -56.5 NC_005887.1 + 10284 0.67 0.480197
Target:  5'- uACGCCUaugGGUGUgucccguuucCGUCUGCggGCGUCGg -3'
miRNA:   3'- uUGCGGAg--CCGCA----------GUAGAUG--CGCAGC- -5'
28083 3' -56.5 NC_005887.1 + 25227 0.67 0.476093
Target:  5'- uGCGUagCUCGGCGUCGUUcagcggauucccgGCGuCGUCGa -3'
miRNA:   3'- uUGCG--GAGCCGCAGUAGa------------UGC-GCAGC- -5'
28083 3' -56.5 NC_005887.1 + 14614 0.68 0.46997
Target:  5'- --gGCCgUCGGCGcCGUCgaggGCGCGcUCa -3'
miRNA:   3'- uugCGG-AGCCGCaGUAGa---UGCGC-AGc -5'
28083 3' -56.5 NC_005887.1 + 23981 0.68 0.449856
Target:  5'- gAGCGCCggcGCGcCGUCUACGCGg-- -3'
miRNA:   3'- -UUGCGGagcCGCaGUAGAUGCGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.