miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28083 5' -59.1 NC_005887.1 + 5232 0.66 0.450351
Target:  5'- --aGAUUCc-GGGCGAcGGCCGcGCGa -3'
miRNA:   3'- uagCUGAGcaCCCGCUuCCGGCaCGC- -5'
28083 5' -59.1 NC_005887.1 + 35560 0.66 0.431004
Target:  5'- cUCGACaUGUGcGGCGAGcGCCGgGCa -3'
miRNA:   3'- uAGCUGaGCAC-CCGCUUcCGGCaCGc -5'
28083 5' -59.1 NC_005887.1 + 32414 0.66 0.412154
Target:  5'- cGUCGACguggcCG-GcGGCGAuguGGCCGgcgGCGa -3'
miRNA:   3'- -UAGCUGa----GCaC-CCGCUu--CCGGCa--CGC- -5'
28083 5' -59.1 NC_005887.1 + 6287 0.66 0.412154
Target:  5'- cAUCGACggCGUGcGCGAgcgcgucgAGGCCuUGCGc -3'
miRNA:   3'- -UAGCUGa-GCACcCGCU--------UCCGGcACGC- -5'
28083 5' -59.1 NC_005887.1 + 11105 0.67 0.358782
Target:  5'- cAUCGGCUgGUGcGcGCGAAgcuGGCCGagGCGc -3'
miRNA:   3'- -UAGCUGAgCAC-C-CGCUU---CCGGCa-CGC- -5'
28083 5' -59.1 NC_005887.1 + 31099 0.68 0.318138
Target:  5'- gGUCGGgauauugaaaauCUCGcagagcaGGGCGAgcuugccgggcAGGCCGUGCGc -3'
miRNA:   3'- -UAGCU------------GAGCa------CCCGCU-----------UCCGGCACGC- -5'
28083 5' -59.1 NC_005887.1 + 29296 0.69 0.295461
Target:  5'- gAUCGGcCUUGUacGcGGCGAcgcuGGCCGUGUGg -3'
miRNA:   3'- -UAGCU-GAGCA--C-CCGCUu---CCGGCACGC- -5'
28083 5' -59.1 NC_005887.1 + 36987 0.69 0.288187
Target:  5'- gGUCGAgCUCGccGGCGAgcacgcgcAGGCCGUacGCGa -3'
miRNA:   3'- -UAGCU-GAGCacCCGCU--------UCCGGCA--CGC- -5'
28083 5' -59.1 NC_005887.1 + 1483 0.69 0.271305
Target:  5'- -cCGACggCGUGcGGCGcucgcgcggcgcGGCCGUGCGg -3'
miRNA:   3'- uaGCUGa-GCAC-CCGCuu----------CCGGCACGC- -5'
28083 5' -59.1 NC_005887.1 + 14692 0.7 0.247486
Target:  5'- gAUCgGGCUCGUcGcGGCGGgcGGGCCGggcGCGg -3'
miRNA:   3'- -UAG-CUGAGCA-C-CCGCU--UCCGGCa--CGC- -5'
28083 5' -59.1 NC_005887.1 + 27130 0.71 0.21166
Target:  5'- cGUCGACUCGUcGGCGAucacgcGGCCGaacgGCc -3'
miRNA:   3'- -UAGCUGAGCAcCCGCUu-----CCGGCa---CGc -5'
28083 5' -59.1 NC_005887.1 + 354 0.72 0.17091
Target:  5'- cUCGA--CGUGGGcCGcAGGCCGUGCu -3'
miRNA:   3'- uAGCUgaGCACCC-GCuUCCGGCACGc -5'
28083 5' -59.1 NC_005887.1 + 6938 1.06 0.000516
Target:  5'- gAUCGACUCGUGGGCGAAGGCCGUGCGc -3'
miRNA:   3'- -UAGCUGAGCACCCGCUUCCGGCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.