Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 23977 | 0.68 | 0.3205 |
Target: 5'- uCG-CGAGCgccggCGCGCCGUcuacgcggaagUC-GCCCGAa -3' miRNA: 3'- -GCaGCUCGa----GCGUGGCG-----------AGuCGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 1230 | 0.68 | 0.3205 |
Target: 5'- uGgCGGGCgcugCGCGgCGCUCAGCaCgCGAa -3' miRNA: 3'- gCaGCUCGa---GCGUgGCGAGUCG-G-GCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 23433 | 0.67 | 0.328294 |
Target: 5'- uCGUCGcAGC-CGCccgccaucccGCCGCUUccaccggaAGCCCGGc -3' miRNA: 3'- -GCAGC-UCGaGCG----------UGGCGAG--------UCGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 14146 | 0.67 | 0.328294 |
Target: 5'- cCGcCGAGacgCGCGgCGCUgaugcggcgcaCAGCCCGAu -3' miRNA: 3'- -GCaGCUCga-GCGUgGCGA-----------GUCGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 1369 | 0.67 | 0.336228 |
Target: 5'- -uUCGAGCUCGgGCaCGUacaUCAGgCCCGc -3' miRNA: 3'- gcAGCUCGAGCgUG-GCG---AGUC-GGGCu -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 14478 | 0.67 | 0.344301 |
Target: 5'- uGUCGGGcCUCGCGCagaUCGuGCCCGc -3' miRNA: 3'- gCAGCUC-GAGCGUGgcgAGU-CGGGCu -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 13934 | 0.67 | 0.352512 |
Target: 5'- --aCGAGCgccUGCGCgCGCUCGGCUgCGAc -3' miRNA: 3'- gcaGCUCGa--GCGUG-GCGAGUCGG-GCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 37861 | 0.67 | 0.352512 |
Target: 5'- aCGcgCGAuGCgCGCGCCGUUCGGCaCCu- -3' miRNA: 3'- -GCa-GCU-CGaGCGUGGCGAGUCG-GGcu -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 1386 | 0.67 | 0.360861 |
Target: 5'- gCGUCGcGCUCGUucaucaugggcCCGCUCGGCagCGGc -3' miRNA: 3'- -GCAGCuCGAGCGu----------GGCGAGUCGg-GCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 17967 | 0.67 | 0.360861 |
Target: 5'- gCG-CGGGCUCGCcggcaucgGCCGCaccgacuggaaCAGCCUGAc -3' miRNA: 3'- -GCaGCUCGAGCG--------UGGCGa----------GUCGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 8923 | 0.67 | 0.369347 |
Target: 5'- uCGUCGAGgaUCGU-CUGCUCGGUCgCGGu -3' miRNA: 3'- -GCAGCUCg-AGCGuGGCGAGUCGG-GCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 6639 | 0.67 | 0.369347 |
Target: 5'- -cUCGgcauGGCUCGUugUGUggGGCCCGAa -3' miRNA: 3'- gcAGC----UCGAGCGugGCGagUCGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 17282 | 0.66 | 0.376233 |
Target: 5'- aCGUCGGGCg-GCGCCGCgcgcgcaaacgcCGGUUCGGc -3' miRNA: 3'- -GCAGCUCGagCGUGGCGa-----------GUCGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 23937 | 0.66 | 0.3771 |
Target: 5'- aCGUCGGccucgcggcgucuGCgcaCGCACCGacgacCUCGGCCCa- -3' miRNA: 3'- -GCAGCU-------------CGa--GCGUGGC-----GAGUCGGGcu -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 41226 | 0.66 | 0.386724 |
Target: 5'- cCGUgacCGAGCUcgacaagcacaCGCACCuGCUCGGCgUCGGc -3' miRNA: 3'- -GCA---GCUCGA-----------GCGUGG-CGAGUCG-GGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 16214 | 0.66 | 0.390264 |
Target: 5'- uCGUCGAGCgccgcgaaacgaagCGCGCCGUgCAggacauccuGCUCGAc -3' miRNA: 3'- -GCAGCUCGa-------------GCGUGGCGaGU---------CGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 26695 | 0.66 | 0.395612 |
Target: 5'- uGUCGcgauacAGCcgUCGCgcgGCCGCgggCAGCUCGAc -3' miRNA: 3'- gCAGC------UCG--AGCG---UGGCGa--GUCGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 5116 | 0.66 | 0.403724 |
Target: 5'- aCGagGuGCUCGCcaagcucggcaugACCGCgCuGCCCGAc -3' miRNA: 3'- -GCagCuCGAGCG-------------UGGCGaGuCGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 27032 | 0.66 | 0.404631 |
Target: 5'- uCGgCGAGCgCGCgACCGCgcacgcugCcGCCCGAc -3' miRNA: 3'- -GCaGCUCGaGCG-UGGCGa-------GuCGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 32913 | 0.66 | 0.412858 |
Target: 5'- gGUCGuugguguAGCccgugauaGCACCGUUCcauAGCCCGAg -3' miRNA: 3'- gCAGC-------UCGag------CGUGGCGAG---UCGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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