Results 41 - 60 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 40714 | 0.69 | 0.243887 |
Target: 5'- -uUCGAcGCUCGUGCCGUccUCgAGCUCGAa -3' miRNA: 3'- gcAGCU-CGAGCGUGGCG--AG-UCGGGCU- -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 6307 | 0.7 | 0.237733 |
Target: 5'- gCGUCGAGgcCUUGCGCCucGC-CGGCgCCGAg -3' miRNA: 3'- -GCAGCUC--GAGCGUGG--CGaGUCG-GGCU- -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 11879 | 0.7 | 0.237733 |
Target: 5'- --aCGGGCcgcgucgCGCACCGCcuguucCAGCCCGGc -3' miRNA: 3'- gcaGCUCGa------GCGUGGCGa-----GUCGGGCU- -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 36716 | 0.7 | 0.23171 |
Target: 5'- -uUCGAGCUCGCguaucgccuucACCGCgUC-GCCCGc -3' miRNA: 3'- gcAGCUCGAGCG-----------UGGCG-AGuCGGGCu -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 38869 | 0.7 | 0.22005 |
Target: 5'- aCGUCGuGCUCGaucauCAgCGCgccaGGCCCGAa -3' miRNA: 3'- -GCAGCuCGAGC-----GUgGCGag--UCGGGCU- -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 25383 | 0.7 | 0.21948 |
Target: 5'- aGUCGAGCUCGCcgacauuGCCGC-CcGCgCGGu -3' miRNA: 3'- gCAGCUCGAGCG-------UGGCGaGuCGgGCU- -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 23915 | 0.7 | 0.208894 |
Target: 5'- gCGUCGAGaUCGCGCCGaUCAGCgUCGu -3' miRNA: 3'- -GCAGCUCgAGCGUGGCgAGUCG-GGCu -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 16115 | 0.68 | 0.282213 |
Target: 5'- uCGUCGAGCggaucggacccgUGCGCCaGCUgCAGgCCGGc -3' miRNA: 3'- -GCAGCUCGa-----------GCGUGG-CGA-GUCgGGCU- -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 38069 | 0.68 | 0.283616 |
Target: 5'- uGUCGAcCUCGCGCgCGaucaUCGGgCCGAg -3' miRNA: 3'- gCAGCUcGAGCGUG-GCg---AGUCgGGCU- -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 38623 | 0.66 | 0.412858 |
Target: 5'- cCGUCcAGCUUGCGCggaucgcggucggCGCgCGGCUCGAc -3' miRNA: 3'- -GCAGcUCGAGCGUG-------------GCGaGUCGGGCU- -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 32913 | 0.66 | 0.412858 |
Target: 5'- gGUCGuugguguAGCccgugauaGCACCGUUCcauAGCCCGAg -3' miRNA: 3'- gCAGC-------UCGag------CGUGGCGAG---UCGGGCU- -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 16214 | 0.66 | 0.390264 |
Target: 5'- uCGUCGAGCgccgcgaaacgaagCGCGCCGUgCAggacauccuGCUCGAc -3' miRNA: 3'- -GCAGCUCGa-------------GCGUGGCGaGU---------CGGGCU- -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 8923 | 0.67 | 0.369347 |
Target: 5'- uCGUCGAGgaUCGU-CUGCUCGGUCgCGGu -3' miRNA: 3'- -GCAGCUCg-AGCGuGGCGAGUCGG-GCU- -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 37861 | 0.67 | 0.352512 |
Target: 5'- aCGcgCGAuGCgCGCGCCGUUCGGCaCCu- -3' miRNA: 3'- -GCa-GCU-CGaGCGUGGCGAGUCG-GGcu -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 13934 | 0.67 | 0.352512 |
Target: 5'- --aCGAGCgccUGCGCgCGCUCGGCUgCGAc -3' miRNA: 3'- gcaGCUCGa--GCGUG-GCGAGUCGG-GCU- -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 1369 | 0.67 | 0.336228 |
Target: 5'- -uUCGAGCUCGgGCaCGUacaUCAGgCCCGc -3' miRNA: 3'- gcAGCUCGAGCgUG-GCG---AGUC-GGGCu -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 14146 | 0.67 | 0.328294 |
Target: 5'- cCGcCGAGacgCGCGgCGCUgaugcggcgcaCAGCCCGAu -3' miRNA: 3'- -GCaGCUCga-GCGUgGCGA-----------GUCGGGCU- -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 23977 | 0.68 | 0.3205 |
Target: 5'- uCG-CGAGCgccggCGCGCCGUcuacgcggaagUC-GCCCGAa -3' miRNA: 3'- -GCaGCUCGa----GCGUGGCG-----------AGuCGGGCU- -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 16865 | 0.68 | 0.312845 |
Target: 5'- uCGUcCGAGCcgcCGCugCGUUguGCCCa- -3' miRNA: 3'- -GCA-GCUCGa--GCGugGCGAguCGGGcu -5' |
|||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 12950 | 0.68 | 0.312845 |
Target: 5'- uGUCGAGCcugaucgcgacCGCGCCGCaUGGgCCGAg -3' miRNA: 3'- gCAGCUCGa----------GCGUGGCGaGUCgGGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home