miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28084 3' -60.1 NC_005887.1 + 30367 0.71 0.203501
Target:  5'- uGcCGAGCUCgguGUACCGCUCGGCgucgCCGu -3'
miRNA:   3'- gCaGCUCGAG---CGUGGCGAGUCG----GGCu -5'
28084 3' -60.1 NC_005887.1 + 15671 0.71 0.198229
Target:  5'- gCGcCGAGCUCGaccagcucacCGCCGCgCGGCCgGAu -3'
miRNA:   3'- -GCaGCUCGAGC----------GUGGCGaGUCGGgCU- -5'
28084 3' -60.1 NC_005887.1 + 31292 0.71 0.198229
Target:  5'- uCGUCGAGCUCG-ACCGgcaUCGGCgcaCCGGu -3'
miRNA:   3'- -GCAGCUCGAGCgUGGCg--AGUCG---GGCU- -5'
28084 3' -60.1 NC_005887.1 + 8459 0.72 0.164572
Target:  5'- gCGaUCGAGCgcccggCGCaACCGCUCGGCgaCGAc -3'
miRNA:   3'- -GC-AGCUCGa-----GCG-UGGCGAGUCGg-GCU- -5'
28084 3' -60.1 NC_005887.1 + 28189 0.73 0.143767
Target:  5'- -aUCGGGCUgUGCGCCGCaUCAGCgCCGc -3'
miRNA:   3'- gcAGCUCGA-GCGUGGCG-AGUCG-GGCu -5'
28084 3' -60.1 NC_005887.1 + 28460 0.73 0.139906
Target:  5'- uCGUCG-GCUUGUugccggGCCGCuUCAGCUCGAc -3'
miRNA:   3'- -GCAGCuCGAGCG------UGGCG-AGUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 30488 0.68 0.290715
Target:  5'- gCGgccCGuGCguugCGCACCGCaaaacugcaUCAGCCCGc -3'
miRNA:   3'- -GCa--GCuCGa---GCGUGGCG---------AGUCGGGCu -5'
28084 3' -60.1 NC_005887.1 + 535 0.68 0.305329
Target:  5'- gCGUCGGccGCcgCGCGCCGCgccggauaCAGCgCGAa -3'
miRNA:   3'- -GCAGCU--CGa-GCGUGGCGa-------GUCGgGCU- -5'
28084 3' -60.1 NC_005887.1 + 5116 0.66 0.403724
Target:  5'- aCGagGuGCUCGCcaagcucggcaugACCGCgCuGCCCGAc -3'
miRNA:   3'- -GCagCuCGAGCG-------------UGGCGaGuCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 26695 0.66 0.395612
Target:  5'- uGUCGcgauacAGCcgUCGCgcgGCCGCgggCAGCUCGAc -3'
miRNA:   3'- gCAGC------UCG--AGCG---UGGCGa--GUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 41226 0.66 0.386724
Target:  5'- cCGUgacCGAGCUcgacaagcacaCGCACCuGCUCGGCgUCGGc -3'
miRNA:   3'- -GCA---GCUCGA-----------GCGUGG-CGAGUCG-GGCU- -5'
28084 3' -60.1 NC_005887.1 + 23937 0.66 0.3771
Target:  5'- aCGUCGGccucgcggcgucuGCgcaCGCACCGacgacCUCGGCCCa- -3'
miRNA:   3'- -GCAGCU-------------CGa--GCGUGGC-----GAGUCGGGcu -5'
28084 3' -60.1 NC_005887.1 + 17282 0.66 0.376233
Target:  5'- aCGUCGGGCg-GCGCCGCgcgcgcaaacgcCGGUUCGGc -3'
miRNA:   3'- -GCAGCUCGagCGUGGCGa-----------GUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 6639 0.67 0.369347
Target:  5'- -cUCGgcauGGCUCGUugUGUggGGCCCGAa -3'
miRNA:   3'- gcAGC----UCGAGCGugGCGagUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 1386 0.67 0.360861
Target:  5'- gCGUCGcGCUCGUucaucaugggcCCGCUCGGCagCGGc -3'
miRNA:   3'- -GCAGCuCGAGCGu----------GGCGAGUCGg-GCU- -5'
28084 3' -60.1 NC_005887.1 + 17967 0.67 0.360861
Target:  5'- gCG-CGGGCUCGCcggcaucgGCCGCaccgacuggaaCAGCCUGAc -3'
miRNA:   3'- -GCaGCUCGAGCG--------UGGCGa----------GUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 23433 0.67 0.328294
Target:  5'- uCGUCGcAGC-CGCccgccaucccGCCGCUUccaccggaAGCCCGGc -3'
miRNA:   3'- -GCAGC-UCGaGCG----------UGGCGAG--------UCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 1230 0.68 0.3205
Target:  5'- uGgCGGGCgcugCGCGgCGCUCAGCaCgCGAa -3'
miRNA:   3'- gCaGCUCGa---GCGUgGCGAGUCG-G-GCU- -5'
28084 3' -60.1 NC_005887.1 + 10923 0.68 0.312845
Target:  5'- aCGUCG-GC-CgGC-CUGCUCAcGCCCGAu -3'
miRNA:   3'- -GCAGCuCGaG-CGuGGCGAGU-CGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 25649 0.68 0.305329
Target:  5'- gGUUGAGCUU-CACCGC-CAGCCg-- -3'
miRNA:   3'- gCAGCUCGAGcGUGGCGaGUCGGgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.