Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28084 | 5' | -55.7 | NC_005887.1 | + | 3196 | 0.66 | 0.57003 |
|
Target: 5'- cGCCCGGacaGCGAGAAGgGccGCGAGcgCu -3' miRNA: 3'- -UGGGCC---CGCUCUUCgUcaCGUUCaaG- -5' |
|||||||
| 28084 | 5' | -55.7 | NC_005887.1 | + | 17272 | 0.67 | 0.493566 |
|
Target: 5'- -gCCGGGCGAGAcgucgGGCGGcgccGCGcgcgcaaacgccGGUUCg -3' miRNA: 3'- ugGGCCCGCUCU-----UCGUCa---CGU------------UCAAG- -5' |
|||||||
| 28084 | 5' | -55.7 | NC_005887.1 | + | 25786 | 0.68 | 0.431968 |
|
Target: 5'- gGCCCGGuCGAGAucGGCuucGUGCAcgAGUUg -3' miRNA: 3'- -UGGGCCcGCUCU--UCGu--CACGU--UCAAg -5' |
|||||||
| 28084 | 5' | -55.7 | NC_005887.1 | + | 31729 | 0.69 | 0.412449 |
|
Target: 5'- cGCCCaGGcuccGCGAGAAGCGuGUcGCGAuGUUCg -3' miRNA: 3'- -UGGG-CC----CGCUCUUCGU-CA-CGUU-CAAG- -5' |
|||||||
| 28084 | 5' | -55.7 | NC_005887.1 | + | 15040 | 0.69 | 0.411488 |
|
Target: 5'- aAUgCGGGCGAGAAGUcgaauucGGgGCAGGUgUCg -3' miRNA: 3'- -UGgGCCCGCUCUUCG-------UCaCGUUCA-AG- -5' |
|||||||
| 28084 | 5' | -55.7 | NC_005887.1 | + | 35622 | 0.76 | 0.147859 |
|
Target: 5'- cGCCCGGGUugaagucgcucGGGcuGAGCGGUGCGAGcUCg -3' miRNA: 3'- -UGGGCCCG-----------CUC--UUCGUCACGUUCaAG- -5' |
|||||||
| 28084 | 5' | -55.7 | NC_005887.1 | + | 6744 | 1.09 | 0.000553 |
|
Target: 5'- aACCCGGGCGAGAAGCAGUGCAAGUUCu -3' miRNA: 3'- -UGGGCCCGCUCUUCGUCACGUUCAAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home