miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28085 3' -51.6 NC_005887.1 + 31659 0.67 0.77596
Target:  5'- aGUCAGCAUCGcg--CCAgaAGCCGUu -3'
miRNA:   3'- gUAGUUGUAGCacuaGGUggUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 30501 0.67 0.77596
Target:  5'- ---gAGCGUCGaaaacGAUCCGCCcguGCUGCu -3'
miRNA:   3'- guagUUGUAGCa----CUAGGUGGu--CGGCG- -5'
28085 3' -51.6 NC_005887.1 + 21884 0.67 0.765401
Target:  5'- uCAUCAGCA-CGUGGcCCGCgCGuaucucgcuuGCCGCc -3'
miRNA:   3'- -GUAGUUGUaGCACUaGGUG-GU----------CGGCG- -5'
28085 3' -51.6 NC_005887.1 + 38866 0.67 0.765401
Target:  5'- --cCGACGUCGUGcUCgauCAUCAGCgCGCc -3'
miRNA:   3'- guaGUUGUAGCACuAG---GUGGUCG-GCG- -5'
28085 3' -51.6 NC_005887.1 + 12001 0.67 0.765401
Target:  5'- -cUCGGCAUCG-GggCauugaaaACCGGCUGCg -3'
miRNA:   3'- guAGUUGUAGCaCuaGg------UGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 17641 0.67 0.764337
Target:  5'- gGUCAGCGcCGUGAagCugCAgggcacgauccucGCCGCg -3'
miRNA:   3'- gUAGUUGUaGCACUagGugGU-------------CGGCG- -5'
28085 3' -51.6 NC_005887.1 + 31477 0.68 0.754693
Target:  5'- uCGUCAGCAcaguUCGUag-UCACCGauuGCCGCg -3'
miRNA:   3'- -GUAGUUGU----AGCAcuaGGUGGU---CGGCG- -5'
28085 3' -51.6 NC_005887.1 + 4298 0.68 0.754693
Target:  5'- gGUCGACAUCcucgccGAggCCgGCCAGCUGCc -3'
miRNA:   3'- gUAGUUGUAGca----CUa-GG-UGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 40254 0.68 0.754693
Target:  5'- -uUCGGCAauauguUCGUGcugCCGCUGGCCGg -3'
miRNA:   3'- guAGUUGU------AGCACua-GGUGGUCGGCg -5'
28085 3' -51.6 NC_005887.1 + 24645 0.68 0.754693
Target:  5'- gCGUCAcgGUgGUGAgaaUCCGcuucgacauuguCCAGCCGCg -3'
miRNA:   3'- -GUAGUugUAgCACU---AGGU------------GGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 40124 0.68 0.754693
Target:  5'- --aCGACuucCGaccgGAUgCGCCAGCCGCc -3'
miRNA:   3'- guaGUUGua-GCa---CUAgGUGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 27535 0.68 0.743848
Target:  5'- cCAUCAGCGUCGcGG-CCGCCAGauugaucggguCCaGCg -3'
miRNA:   3'- -GUAGUUGUAGCaCUaGGUGGUC-----------GG-CG- -5'
28085 3' -51.6 NC_005887.1 + 37699 0.68 0.73288
Target:  5'- gGUCugcGCGUCGcugagauccuUGAUCgCGCCGGCgGCc -3'
miRNA:   3'- gUAGu--UGUAGC----------ACUAG-GUGGUCGgCG- -5'
28085 3' -51.6 NC_005887.1 + 39632 0.68 0.710625
Target:  5'- aCGUCAGucCGUCGUcGcgCgGCuCGGCCGCu -3'
miRNA:   3'- -GUAGUU--GUAGCA-CuaGgUG-GUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 8176 0.68 0.710625
Target:  5'- aAUCAACGUCGUcGUUUACgGGCCu- -3'
miRNA:   3'- gUAGUUGUAGCAcUAGGUGgUCGGcg -5'
28085 3' -51.6 NC_005887.1 + 34367 0.68 0.710625
Target:  5'- uCGUCaAGCGaCGUGAUUCGCUuGUCGCc -3'
miRNA:   3'- -GUAG-UUGUaGCACUAGGUGGuCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 11029 0.68 0.710625
Target:  5'- gGUCGGCA-CGUGGgacgugaCCACCGGUgCGCc -3'
miRNA:   3'- gUAGUUGUaGCACUa------GGUGGUCG-GCG- -5'
28085 3' -51.6 NC_005887.1 + 41517 0.68 0.699365
Target:  5'- aGUCGACGgugcUCGgcaaGAUCCGCgAGgCGCu -3'
miRNA:   3'- gUAGUUGU----AGCa---CUAGGUGgUCgGCG- -5'
28085 3' -51.6 NC_005887.1 + 2164 0.69 0.688034
Target:  5'- gAUCGGCAuggacuUCGgccugaCGCCGGCCGCg -3'
miRNA:   3'- gUAGUUGU------AGCacuag-GUGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 41168 0.69 0.688034
Target:  5'- gCcgCAAUgguGUCGaacaUGAUCCGCCuGGCUGCa -3'
miRNA:   3'- -GuaGUUG---UAGC----ACUAGGUGG-UCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.