miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28085 5' -58.7 NC_005887.1 + 341 0.66 0.458199
Target:  5'- ----cGCCGcGGCGAcacucgacGUGGGCCGCaGGCc -3'
miRNA:   3'- cucuuCGGC-UCGCU--------CACCCGGUG-CUG- -5'
28085 5' -58.7 NC_005887.1 + 18525 0.66 0.438501
Target:  5'- uGGAuucuGGacaCGGGCGuucucGGUGGGCgGCGGCg -3'
miRNA:   3'- cUCU----UCg--GCUCGC-----UCACCCGgUGCUG- -5'
28085 5' -58.7 NC_005887.1 + 41465 0.66 0.419295
Target:  5'- -cGAGGCCGccugacucguccGGCGGcGcGGGCCACG-Cg -3'
miRNA:   3'- cuCUUCGGC------------UCGCU-CaCCCGGUGCuG- -5'
28085 5' -58.7 NC_005887.1 + 10977 0.66 0.413634
Target:  5'- ---uAGCCGAGCgcgucGAgaucaugaucuggacGUGGGCCAuCGACg -3'
miRNA:   3'- cucuUCGGCUCG-----CU---------------CACCCGGU-GCUG- -5'
28085 5' -58.7 NC_005887.1 + 6911 0.67 0.381569
Target:  5'- uGGccGCCGAGCGAaucccgcaacucgGcaUGGGCCGCGcCg -3'
miRNA:   3'- cUCuuCGGCUCGCU-------------C--ACCCGGUGCuG- -5'
28085 5' -58.7 NC_005887.1 + 10634 0.67 0.373596
Target:  5'- -cGGAGCCuGGGCGGcgucguUGGGCCAacguuCGACg -3'
miRNA:   3'- cuCUUCGG-CUCGCUc-----ACCCGGU-----GCUG- -5'
28085 5' -58.7 NC_005887.1 + 3183 0.67 0.373596
Target:  5'- cGGGcAGCUGccgcgcccggacAGCGAGaaGGGCCGCGAg -3'
miRNA:   3'- -CUCuUCGGC------------UCGCUCa-CCCGGUGCUg -5'
28085 5' -58.7 NC_005887.1 + 17264 0.68 0.32339
Target:  5'- aAGAucguGCCGGGCGAGacgucGGGCgGCGcCg -3'
miRNA:   3'- cUCUu---CGGCUCGCUCa----CCCGgUGCuG- -5'
28085 5' -58.7 NC_005887.1 + 39391 0.72 0.187775
Target:  5'- gGAGucGCCG-GCGAGgauGGUCGCGGCg -3'
miRNA:   3'- -CUCuuCGGCuCGCUCac-CCGGUGCUG- -5'
28085 5' -58.7 NC_005887.1 + 1582 0.72 0.182763
Target:  5'- --uGGGCCG-GUGGGUGGGUgGCGGCc -3'
miRNA:   3'- cucUUCGGCuCGCUCACCCGgUGCUG- -5'
28085 5' -58.7 NC_005887.1 + 6608 1.08 0.000337
Target:  5'- cGAGAAGCCGAGCGAGUGGGCCACGACc -3'
miRNA:   3'- -CUCUUCGGCUCGCUCACCCGGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.