Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28088 | 5' | -55.4 | NC_005887.1 | + | 27360 | 0.69 | 0.478326 |
Target: 5'- gGCACGccuGCgGCCUGCgCGGccugCGCGg -3' miRNA: 3'- gCGUGCu--UG-CGGACG-GCCuuaaGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 1808 | 0.69 | 0.468112 |
Target: 5'- uGCGCGAGCGCCaGaCCGucg-UCGCu -3' miRNA: 3'- gCGUGCUUGCGGaC-GGCcuuaAGCGc -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 26485 | 0.69 | 0.458011 |
Target: 5'- uGCugGuGCGCCUGCUGcg---CGCGg -3' miRNA: 3'- gCGugCuUGCGGACGGCcuuaaGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 27202 | 0.7 | 0.428429 |
Target: 5'- uGCcguCGAGCGCCUGCaUGGggUcggUCGgGu -3' miRNA: 3'- gCGu--GCUUGCGGACG-GCCuuA---AGCgC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 5586 | 0.7 | 0.428429 |
Target: 5'- aGCAUGAACGCCU-UUGGAAccugccgCGCGg -3' miRNA: 3'- gCGUGCUUGCGGAcGGCCUUaa-----GCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 25043 | 0.7 | 0.418822 |
Target: 5'- aGCACGcgguGCGCCgaaCCGGcGUUUGCGc -3' miRNA: 3'- gCGUGCu---UGCGGac-GGCCuUAAGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 29050 | 0.68 | 0.55255 |
Target: 5'- uGC-CGAACGCCUGgCCGaucuGGUUCaGCGc -3' miRNA: 3'- gCGuGCUUGCGGAC-GGCc---UUAAG-CGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 37445 | 0.67 | 0.563467 |
Target: 5'- gCGCACGAACaCCUcgcGCCGGcccUCgGCGa -3' miRNA: 3'- -GCGUGCUUGcGGA---CGGCCuuaAG-CGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 39277 | 0.67 | 0.574441 |
Target: 5'- gGUcgGCGuucAGCGCCUGCaGGAucUUCGCGu -3' miRNA: 3'- gCG--UGC---UUGCGGACGgCCUu-AAGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 21195 | 0.66 | 0.674281 |
Target: 5'- gGCAuCGAaaACGCC-GUCGGAuuggcacuagcAUUCGUGg -3' miRNA: 3'- gCGU-GCU--UGCGGaCGGCCU-----------UAAGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 30871 | 0.66 | 0.663208 |
Target: 5'- uGCGCGuagaccUGCuCUGCCuGAuuGUUCGCGa -3' miRNA: 3'- gCGUGCuu----GCG-GACGGcCU--UAAGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 24207 | 0.66 | 0.658771 |
Target: 5'- gGCACGAcgucggcggcccGCGCUUcGCCGGuugcguacagCGCGu -3' miRNA: 3'- gCGUGCU------------UGCGGA-CGGCCuuaa------GCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 24758 | 0.66 | 0.652107 |
Target: 5'- gCGCGCGAGCGCgggaUUGaCGGGcguGUUCGUc -3' miRNA: 3'- -GCGUGCUUGCG----GACgGCCU---UAAGCGc -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 990 | 0.66 | 0.640987 |
Target: 5'- uGCuCGAACGCUUcCCGGcggcgCGCGg -3' miRNA: 3'- gCGuGCUUGCGGAcGGCCuuaa-GCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 32506 | 0.66 | 0.62652 |
Target: 5'- gCGCGCGGcguucagguuggccGCGCUgaccgGCUGcGAcgcGUUCGCGg -3' miRNA: 3'- -GCGUGCU--------------UGCGGa----CGGC-CU---UAAGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 26114 | 0.67 | 0.607618 |
Target: 5'- cCGUGCGcuCGCCgGCCGGcGUaucgaUCGUGa -3' miRNA: 3'- -GCGUGCuuGCGGaCGGCCuUA-----AGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 10702 | 0.67 | 0.607618 |
Target: 5'- gGCGCGAugcugacugGCuGCuCUGCCGGGAUggaaagUgGCGg -3' miRNA: 3'- gCGUGCU---------UG-CG-GACGGCCUUA------AgCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 30755 | 0.67 | 0.607618 |
Target: 5'- gCGUGuCGAGCGCCgauCCGGuGUUCGgGu -3' miRNA: 3'- -GCGU-GCUUGCGGac-GGCCuUAAGCgC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 37861 | 0.67 | 0.596525 |
Target: 5'- aCGCGCGAugcgcGCGCCguUCGGcaccUUCGCGg -3' miRNA: 3'- -GCGUGCU-----UGCGGacGGCCuu--AAGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 38779 | 0.67 | 0.574441 |
Target: 5'- uGCACGuGCGUCUugucgaucagGCCGGAAUuguucUCgGCGa -3' miRNA: 3'- gCGUGCuUGCGGA----------CGGCCUUA-----AG-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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