miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28089 3' -50.5 NC_005887.1 + 28350 0.66 0.881889
Target:  5'- uGCGGAGGCGCGCGGCgcauucuucgucgGGaacGUcagGUGCa -3'
miRNA:   3'- -CGUCUUUGUGUGCCGga-----------CCa--CA---UACG- -5'
28089 3' -50.5 NC_005887.1 + 13037 0.66 0.87868
Target:  5'- aGCAGAucCACACGGCCaGcGUcgccGCg -3'
miRNA:   3'- -CGUCUuuGUGUGCCGGaC-CAcauaCG- -5'
28089 3' -50.5 NC_005887.1 + 25491 0.66 0.869624
Target:  5'- cGCAGcggcggcucggacGAugGCGCGGCg-GGUGgcgGCa -3'
miRNA:   3'- -CGUC-------------UUugUGUGCCGgaCCACauaCG- -5'
28089 3' -50.5 NC_005887.1 + 10268 0.66 0.869624
Target:  5'- cGUGGAAGCGCugGacuacGCCUaugGGUGUGucccguuuccgucUGCg -3'
miRNA:   3'- -CGUCUUUGUGugC-----CGGA---CCACAU-------------ACG- -5'
28089 3' -50.5 NC_005887.1 + 35219 0.67 0.853207
Target:  5'- cGCAGcAGCuuguCGGCCUGcGUGgg-GCu -3'
miRNA:   3'- -CGUCuUUGugu-GCCGGAC-CACauaCG- -5'
28089 3' -50.5 NC_005887.1 + 7811 0.67 0.812725
Target:  5'- cGCAGAcgaagacgaacccgGGCAUccgcuGCGGCCUGaUGggcGUGCa -3'
miRNA:   3'- -CGUCU--------------UUGUG-----UGCCGGACcACa--UACG- -5'
28089 3' -50.5 NC_005887.1 + 35569 0.69 0.731176
Target:  5'- uGCGGcgagcgccGGGCACACGGCCUuGGccu-UGCa -3'
miRNA:   3'- -CGUC--------UUUGUGUGCCGGA-CCacauACG- -5'
28089 3' -50.5 NC_005887.1 + 28248 0.69 0.719975
Target:  5'- uCAGaAAGCugGCGGUCUGGUcg--GCg -3'
miRNA:   3'- cGUC-UUUGugUGCCGGACCAcauaCG- -5'
28089 3' -50.5 NC_005887.1 + 14147 0.7 0.697294
Target:  5'- cGCcGAGACGCGCGGCgCUGaUGcg-GCg -3'
miRNA:   3'- -CGuCUUUGUGUGCCG-GACcACauaCG- -5'
28089 3' -50.5 NC_005887.1 + 38738 0.7 0.697294
Target:  5'- gGCcGAAGCgcuGCGCGGCCUGGcgcaacGUGaGCu -3'
miRNA:   3'- -CGuCUUUG---UGUGCCGGACCa-----CAUaCG- -5'
28089 3' -50.5 NC_005887.1 + 11208 0.7 0.674333
Target:  5'- uGCAGGcguauGCGCACGGCCUGcccg--GCa -3'
miRNA:   3'- -CGUCUu----UGUGUGCCGGACcacauaCG- -5'
28089 3' -50.5 NC_005887.1 + 19197 0.7 0.670871
Target:  5'- cGUGGAGACAgGCGGCgCgGuuacgacgagcgucGUGUAUGCa -3'
miRNA:   3'- -CGUCUUUGUgUGCCG-GaC--------------CACAUACG- -5'
28089 3' -50.5 NC_005887.1 + 21263 0.7 0.662779
Target:  5'- uCGGggGCAcCGCGGCggcGGcGUAUGCg -3'
miRNA:   3'- cGUCuuUGU-GUGCCGga-CCaCAUACG- -5'
28089 3' -50.5 NC_005887.1 + 1688 0.73 0.513793
Target:  5'- uGCAGGAugGUGCGGCC-GGUGaUcgGCg -3'
miRNA:   3'- -CGUCUUugUGUGCCGGaCCAC-AuaCG- -5'
28089 3' -50.5 NC_005887.1 + 4722 1.16 0.00074
Target:  5'- aGCAGAAACACACGGCCUGGUGUAUGCg -3'
miRNA:   3'- -CGUCUUUGUGUGCCGGACCACAUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.