miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28089 5' -51.2 NC_005887.1 + 40822 0.67 0.805882
Target:  5'- cGCGguCgucGACaGcAGGUCCGGguacguGUUCCGCa -3'
miRNA:   3'- -CGCguGa--CUG-C-UCUAGGCU------UAAGGCG- -5'
28089 5' -51.2 NC_005887.1 + 1495 0.68 0.795923
Target:  5'- cGCGCGC-GGCGgcuucgccgguGGAUCCGA---CUGCa -3'
miRNA:   3'- -CGCGUGaCUGC-----------UCUAGGCUuaaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 622 0.68 0.764991
Target:  5'- cGCGCGC---CGGGAUCgGAucgCCGCc -3'
miRNA:   3'- -CGCGUGacuGCUCUAGgCUuaaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 16188 0.69 0.732742
Target:  5'- cGCGCGCgacacgaucGACGAGGacgucgUCGAGcgCCGCg -3'
miRNA:   3'- -CGCGUGa--------CUGCUCUa-----GGCUUaaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 15895 0.69 0.721759
Target:  5'- gGUGCGCUcGACGcgcAGcuggCCGAccugcGUUCCGCg -3'
miRNA:   3'- -CGCGUGA-CUGC---UCua--GGCU-----UAAGGCG- -5'
28089 5' -51.2 NC_005887.1 + 40893 0.69 0.721759
Target:  5'- cGCGaCGgUGACGAcGAgccgCCGAAggcuaCCGCg -3'
miRNA:   3'- -CGC-GUgACUGCU-CUa---GGCUUaa---GGCG- -5'
28089 5' -51.2 NC_005887.1 + 8855 0.7 0.688286
Target:  5'- cGCGCggauGCUGaACGGcGAUCCGGAUuaCGUc -3'
miRNA:   3'- -CGCG----UGAC-UGCU-CUAGGCUUAagGCG- -5'
28089 5' -51.2 NC_005887.1 + 30775 0.7 0.688286
Target:  5'- uGCGCGC-GGCGAGuUCC---UUCUGCg -3'
miRNA:   3'- -CGCGUGaCUGCUCuAGGcuuAAGGCG- -5'
28089 5' -51.2 NC_005887.1 + 27861 0.7 0.688286
Target:  5'- uGCGCAgCUuuuCGAGAUugagCCGAAUUUCGUa -3'
miRNA:   3'- -CGCGU-GAcu-GCUCUA----GGCUUAAGGCG- -5'
28089 5' -51.2 NC_005887.1 + 8866 0.7 0.676996
Target:  5'- gGCGCGCccGuCGAGAUCgCGAcg-CCGUa -3'
miRNA:   3'- -CGCGUGa-CuGCUCUAG-GCUuaaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 29018 0.71 0.620098
Target:  5'- cUGCGC-GGCGAGAUCCGcGAUgcggCCGg -3'
miRNA:   3'- cGCGUGaCUGCUCUAGGC-UUAa---GGCg -5'
28089 5' -51.2 NC_005887.1 + 3341 0.71 0.59734
Target:  5'- aUGCGCUGaACGAGAUCgCG---UCCGUc -3'
miRNA:   3'- cGCGUGAC-UGCUCUAG-GCuuaAGGCG- -5'
28089 5' -51.2 NC_005887.1 + 26438 0.72 0.551166
Target:  5'- cGCGCGCUGcagccgcGCGAGAUCCGAcUUgaaGUg -3'
miRNA:   3'- -CGCGUGAC-------UGCUCUAGGCUuAAgg-CG- -5'
28089 5' -51.2 NC_005887.1 + 3955 0.73 0.497528
Target:  5'- aGCGCACUGACc-GAaCCGGAgaUCGCa -3'
miRNA:   3'- -CGCGUGACUGcuCUaGGCUUaaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 8723 0.73 0.486861
Target:  5'- cGCGCGCU-ACGGGAagUUCGAAgaccacgCCGCg -3'
miRNA:   3'- -CGCGUGAcUGCUCU--AGGCUUaa-----GGCG- -5'
28089 5' -51.2 NC_005887.1 + 3481 0.74 0.435275
Target:  5'- gGCGCGCUGAUGAucGAgcaCGAcgUCgGCa -3'
miRNA:   3'- -CGCGUGACUGCU--CUag-GCUuaAGgCG- -5'
28089 5' -51.2 NC_005887.1 + 26225 0.75 0.386992
Target:  5'- cUGCAgCUGGCGcacGGGUCCGA--UCCGCu -3'
miRNA:   3'- cGCGU-GACUGC---UCUAGGCUuaAGGCG- -5'
28089 5' -51.2 NC_005887.1 + 7962 0.75 0.377767
Target:  5'- cGCGCGCUGACGAaGAUCggcgaaagCGAAUcacgUCGCu -3'
miRNA:   3'- -CGCGUGACUGCU-CUAG--------GCUUAa---GGCG- -5'
28089 5' -51.2 NC_005887.1 + 40644 0.76 0.359766
Target:  5'- -gGCACUGACGAGcgcgcgCCGAucaccggCCGCa -3'
miRNA:   3'- cgCGUGACUGCUCua----GGCUuaa----GGCG- -5'
28089 5' -51.2 NC_005887.1 + 4757 1.14 0.000993
Target:  5'- cGCGCACUGACGAGAUCCGAAUUCCGCc -3'
miRNA:   3'- -CGCGUGACUGCUCUAGGCUUAAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.