Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 140327 | 1.12 | 0.003737 |
Target: 5'- gGCCACUGAACCACAACGGCAUGGACGg -3' miRNA: 3'- -CGGUGACUUGGUGUUGCCGUACCUGC- -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 64734 | 0.77 | 0.526956 |
Target: 5'- cGCgGCUGGggaaACCGCGGCcucGGCGUGGGCa -3' miRNA: 3'- -CGgUGACU----UGGUGUUG---CCGUACCUGc -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 125596 | 0.74 | 0.692071 |
Target: 5'- gGCCGCU--GCCGCGGCGGCGgccgucGGAgGg -3' miRNA: 3'- -CGGUGAcuUGGUGUUGCCGUa-----CCUgC- -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 53313 | 0.73 | 0.719597 |
Target: 5'- aGCCACgccUucgacaguacagacGAACC-CGACGGUGUGGACGg -3' miRNA: 3'- -CGGUG---A--------------CUUGGuGUUGCCGUACCUGC- -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 85712 | 0.73 | 0.728656 |
Target: 5'- cGCCACacgucucUGGgggugucuccuccgGCCACGGCGGCGUGGcccACGu -3' miRNA: 3'- -CGGUG-------ACU--------------UGGUGUUGCCGUACC---UGC- -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 121453 | 0.73 | 0.73266 |
Target: 5'- cCCGCUGGGCCAU-GCGGCA-GGAUc -3' miRNA: 3'- cGGUGACUUGGUGuUGCCGUaCCUGc -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 13942 | 0.72 | 0.752451 |
Target: 5'- aGCCGCUGGuauagcgcGCCGgGGCuGGCGgccuUGGGCGg -3' miRNA: 3'- -CGGUGACU--------UGGUgUUG-CCGU----ACCUGC- -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 138374 | 0.72 | 0.775612 |
Target: 5'- uGCUugUaGAACCucuucucgaucuuggGCAGCGGCA-GGGCGg -3' miRNA: 3'- -CGGugA-CUUGG---------------UGUUGCCGUaCCUGC- -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 139771 | 0.72 | 0.781289 |
Target: 5'- cGCUACUGGGCCGCGcuacucaacAUGGC--GGGCGc -3' miRNA: 3'- -CGGUGACUUGGUGU---------UGCCGuaCCUGC- -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 147736 | 0.72 | 0.799836 |
Target: 5'- gGCCGCUGcagcgGGCCGCGAUGGUGgccaGGGCc -3' miRNA: 3'- -CGGUGAC-----UUGGUGUUGCCGUa---CCUGc -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 68876 | 0.7 | 0.851429 |
Target: 5'- cGCCAUaGAgccGCCGCAGCGGcCAUaGACa -3' miRNA: 3'- -CGGUGaCU---UGGUGUUGCC-GUAcCUGc -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 123518 | 0.7 | 0.867059 |
Target: 5'- gGCCGCgGGcgcgcagguacGCCGCGGCGGCugcGUGG-CGg -3' miRNA: 3'- -CGGUGaCU-----------UGGUGUUGCCG---UACCuGC- -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 140292 | 0.7 | 0.874549 |
Target: 5'- gGCCACgu--CCACAACGGCuccccgAUGGcCGu -3' miRNA: 3'- -CGGUGacuuGGUGUUGCCG------UACCuGC- -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 20141 | 0.69 | 0.895649 |
Target: 5'- gGCgGgUGGAUUACAAcCGGCGggGGACGa -3' miRNA: 3'- -CGgUgACUUGGUGUU-GCCGUa-CCUGC- -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 116346 | 0.69 | 0.902211 |
Target: 5'- cGCCGCUGGugcGCUACAACgccgagggGGCccGGGCc -3' miRNA: 3'- -CGGUGACU---UGGUGUUG--------CCGuaCCUGc -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 114634 | 0.69 | 0.902211 |
Target: 5'- cGCCGCgcaGAGCCACcgcGCGGCcaaccgauggGGACu -3' miRNA: 3'- -CGGUGa--CUUGGUGu--UGCCGua--------CCUGc -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 127146 | 0.69 | 0.908531 |
Target: 5'- uCCGCgGGuuCCACAACGGgAaauUGGGCGg -3' miRNA: 3'- cGGUGaCUu-GGUGUUGCCgU---ACCUGC- -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 118239 | 0.68 | 0.925471 |
Target: 5'- gGUCGCcGGGCCACGGgcuccucaucaccCGGCGguggGGACGc -3' miRNA: 3'- -CGGUGaCUUGGUGUU-------------GCCGUa---CCUGC- -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 137618 | 0.68 | 0.926018 |
Target: 5'- cGCCGCc--GCgGCAGCGGCcgccccgGGGCGg -3' miRNA: 3'- -CGGUGacuUGgUGUUGCCGua-----CCUGC- -5' |
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2809 | 3' | -52.9 | NC_001491.2 | + | 68577 | 0.68 | 0.936438 |
Target: 5'- aGCCACgguguuugUGAGCCGCGccgcggGCGGCucaaacggGGugGu -3' miRNA: 3'- -CGGUG--------ACUUGGUGU------UGCCGua------CCugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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