Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 1650 | 0.66 | 0.974225 |
Target: 5'- aGCUuCUGGACgagccuaGCGAaGGCAUGGACc -3' miRNA: 3'- -CGGuGACUUGg------UGUUgCCGUACCUGc -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 8221 | 0.67 | 0.961856 |
Target: 5'- gGCCAUggagGAAUacaCugAugGGCcgAUGGACGa -3' miRNA: 3'- -CGGUGa---CUUG---GugUugCCG--UACCUGC- -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 13942 | 0.72 | 0.752451 |
Target: 5'- aGCCGCUGGuauagcgcGCCGgGGCuGGCGgccuUGGGCGg -3' miRNA: 3'- -CGGUGACU--------UGGUgUUG-CCGU----ACCUGC- -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 16849 | 0.66 | 0.96847 |
Target: 5'- uCCACgaGAAaugUUACcGCGGCAUGGugGu -3' miRNA: 3'- cGGUGa-CUU---GGUGuUGCCGUACCugC- -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 20141 | 0.69 | 0.895649 |
Target: 5'- gGCgGgUGGAUUACAAcCGGCGggGGACGa -3' miRNA: 3'- -CGgUgACUUGGUGUU-GCCGUa-CCUGC- -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 33456 | 0.66 | 0.974225 |
Target: 5'- gGCCAgaGAguugACCAgGGCucGCAUGGACc -3' miRNA: 3'- -CGGUgaCU----UGGUgUUGc-CGUACCUGc -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 44598 | 0.66 | 0.97753 |
Target: 5'- uGCCACUGuccgauuguguggcGCCGCuGGCGGCcuuugaaGUGGAUu -3' miRNA: 3'- -CGGUGACu-------------UGGUG-UUGCCG-------UACCUGc -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 45125 | 0.67 | 0.961856 |
Target: 5'- gGCCGCggcgGGggccGCCGCAGauuUGGCcgGGGCc -3' miRNA: 3'- -CGGUGa---CU----UGGUGUU---GCCGuaCCUGc -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 45191 | 0.67 | 0.961856 |
Target: 5'- gGCCGCggcgGGggccGCCGCAGauuUGGCcgGGGCc -3' miRNA: 3'- -CGGUGa---CU----UGGUGUU---GCCGuaCCUGc -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 45257 | 0.67 | 0.961856 |
Target: 5'- gGCCGCggcgGGggccGCCGCAGauuUGGCcgGGGCc -3' miRNA: 3'- -CGGUGa---CU----UGGUGUU---GCCGuaCCUGc -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 53313 | 0.73 | 0.719597 |
Target: 5'- aGCCACgccUucgacaguacagacGAACC-CGACGGUGUGGACGg -3' miRNA: 3'- -CGGUG---A--------------CUUGGuGUUGCCGUACCUGC- -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 64734 | 0.77 | 0.526956 |
Target: 5'- cGCgGCUGGggaaACCGCGGCcucGGCGUGGGCa -3' miRNA: 3'- -CGgUGACU----UGGUGUUG---CCGUACCUGc -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 68577 | 0.68 | 0.936438 |
Target: 5'- aGCCACgguguuugUGAGCCGCGccgcggGCGGCucaaacggGGugGu -3' miRNA: 3'- -CGGUG--------ACUUGGUGU------UGCCGua------CCugC- -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 68876 | 0.7 | 0.851429 |
Target: 5'- cGCCAUaGAgccGCCGCAGCGGcCAUaGACa -3' miRNA: 3'- -CGGUGaCU---UGGUGUUGCC-GUAcCUGc -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 71139 | 0.66 | 0.96847 |
Target: 5'- -aCACUGGACaCACGagGCGGUAUgagGGAUa -3' miRNA: 3'- cgGUGACUUG-GUGU--UGCCGUA---CCUGc -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 85712 | 0.73 | 0.728656 |
Target: 5'- cGCCACacgucucUGGgggugucuccuccgGCCACGGCGGCGUGGcccACGu -3' miRNA: 3'- -CGGUG-------ACU--------------UGGUGUUGCCGUACC---UGC- -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 103981 | 0.67 | 0.961856 |
Target: 5'- uGCCGCUGAACCcaaacACAAacuUGcGCAUGcGCGu -3' miRNA: 3'- -CGGUGACUUGG-----UGUU---GC-CGUACcUGC- -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 114634 | 0.69 | 0.902211 |
Target: 5'- cGCCGCgcaGAGCCACcgcGCGGCcaaccgauggGGACu -3' miRNA: 3'- -CGGUGa--CUUGGUGu--UGCCGua--------CCUGc -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 114726 | 0.67 | 0.953935 |
Target: 5'- cGCCAgcgcgucCUGcccGACUACGACGGCugcaaGGACa -3' miRNA: 3'- -CGGU-------GAC---UUGGUGUUGCCGua---CCUGc -5' |
|||||||
2809 | 3' | -52.9 | NC_001491.2 | + | 116346 | 0.69 | 0.902211 |
Target: 5'- cGCCGCUGGugcGCUACAACgccgagggGGCccGGGCc -3' miRNA: 3'- -CGGUGACU---UGGUGUUG--------CCGuaCCUGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home