miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2809 3' -52.9 NC_001491.2 + 147736 0.72 0.799836
Target:  5'- gGCCGCUGcagcgGGCCGCGAUGGUGgccaGGGCc -3'
miRNA:   3'- -CGGUGAC-----UUGGUGUUGCCGUa---CCUGc -5'
2809 3' -52.9 NC_001491.2 + 147601 0.67 0.958211
Target:  5'- cGUCGCUGGGCCGCGGagugUGGCAgucuccgcggGGaACGc -3'
miRNA:   3'- -CGGUGACUUGGUGUU----GCCGUa---------CC-UGC- -5'
2809 3' -52.9 NC_001491.2 + 146406 0.67 0.950224
Target:  5'- uGUUGCUGGcugGCCGCGgcaGCGGCGgccUGGGCc -3'
miRNA:   3'- -CGGUGACU---UGGUGU---UGCCGU---ACCUGc -5'
2809 3' -52.9 NC_001491.2 + 140327 1.12 0.003737
Target:  5'- gGCCACUGAACCACAACGGCAUGGACGg -3'
miRNA:   3'- -CGGUGACUUGGUGUUGCCGUACCUGC- -5'
2809 3' -52.9 NC_001491.2 + 140292 0.7 0.874549
Target:  5'- gGCCACgu--CCACAACGGCuccccgAUGGcCGu -3'
miRNA:   3'- -CGGUGacuuGGUGUUGCCG------UACCuGC- -5'
2809 3' -52.9 NC_001491.2 + 139988 0.66 0.973957
Target:  5'- cCCGCUGcGCCGCGccgugggGCGGUaccucGUGGAUc -3'
miRNA:   3'- cGGUGACuUGGUGU-------UGCCG-----UACCUGc -5'
2809 3' -52.9 NC_001491.2 + 139771 0.72 0.781289
Target:  5'- cGCUACUGGGCCGCGcuacucaacAUGGC--GGGCGc -3'
miRNA:   3'- -CGGUGACUUGGUGU---------UGCCGuaCCUGC- -5'
2809 3' -52.9 NC_001491.2 + 138374 0.72 0.775612
Target:  5'- uGCUugUaGAACCucuucucgaucuuggGCAGCGGCA-GGGCGg -3'
miRNA:   3'- -CGGugA-CUUGG---------------UGUUGCCGUaCCUGC- -5'
2809 3' -52.9 NC_001491.2 + 137618 0.68 0.926018
Target:  5'- cGCCGCc--GCgGCAGCGGCcgccccgGGGCGg -3'
miRNA:   3'- -CGGUGacuUGgUGUUGCCGua-----CCUGC- -5'
2809 3' -52.9 NC_001491.2 + 127146 0.69 0.908531
Target:  5'- uCCGCgGGuuCCACAACGGgAaauUGGGCGg -3'
miRNA:   3'- cGGUGaCUu-GGUGUUGCCgU---ACCUGC- -5'
2809 3' -52.9 NC_001491.2 + 125596 0.74 0.692071
Target:  5'- gGCCGCU--GCCGCGGCGGCGgccgucGGAgGg -3'
miRNA:   3'- -CGGUGAcuUGGUGUUGCCGUa-----CCUgC- -5'
2809 3' -52.9 NC_001491.2 + 125103 0.66 0.973957
Target:  5'- aGCCGCggccggggGGGCCGCcaacuccAGCGGCGaGGAgGc -3'
miRNA:   3'- -CGGUGa-------CUUGGUG-------UUGCCGUaCCUgC- -5'
2809 3' -52.9 NC_001491.2 + 124647 0.67 0.965273
Target:  5'- cGCCGaggGGAUCACAAauUGGCAgGGGCc -3'
miRNA:   3'- -CGGUga-CUUGGUGUU--GCCGUaCCUGc -5'
2809 3' -52.9 NC_001491.2 + 123518 0.7 0.867059
Target:  5'- gGCCGCgGGcgcgcagguacGCCGCGGCGGCugcGUGG-CGg -3'
miRNA:   3'- -CGGUGaCU-----------UGGUGUUGCCG---UACCuGC- -5'
2809 3' -52.9 NC_001491.2 + 121453 0.73 0.73266
Target:  5'- cCCGCUGGGCCAU-GCGGCA-GGAUc -3'
miRNA:   3'- cGGUGACUUGGUGuUGCCGUaCCUGc -5'
2809 3' -52.9 NC_001491.2 + 118239 0.68 0.925471
Target:  5'- gGUCGCcGGGCCACGGgcuccucaucaccCGGCGguggGGACGc -3'
miRNA:   3'- -CGGUGaCUUGGUGUU-------------GCCGUa---CCUGC- -5'
2809 3' -52.9 NC_001491.2 + 116346 0.69 0.902211
Target:  5'- cGCCGCUGGugcGCUACAACgccgagggGGCccGGGCc -3'
miRNA:   3'- -CGGUGACU---UGGUGUUG--------CCGuaCCUGc -5'
2809 3' -52.9 NC_001491.2 + 114726 0.67 0.953935
Target:  5'- cGCCAgcgcgucCUGcccGACUACGACGGCugcaaGGACa -3'
miRNA:   3'- -CGGU-------GAC---UUGGUGUUGCCGua---CCUGc -5'
2809 3' -52.9 NC_001491.2 + 114634 0.69 0.902211
Target:  5'- cGCCGCgcaGAGCCACcgcGCGGCcaaccgauggGGACu -3'
miRNA:   3'- -CGGUGa--CUUGGUGu--UGCCGua--------CCUGc -5'
2809 3' -52.9 NC_001491.2 + 103981 0.67 0.961856
Target:  5'- uGCCGCUGAACCcaaacACAAacuUGcGCAUGcGCGu -3'
miRNA:   3'- -CGGUGACUUGG-----UGUU---GC-CGUACcUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.