miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2809 5' -57.3 NC_001491.2 + 91705 0.65 0.88603
Target:  5'- --aGUCUGCGccucuaucgcuagcACGGCgUCCCUGAcgcUGGCc -3'
miRNA:   3'- gugCAGGUGU--------------UGCCG-AGGGGCU---ACCG- -5'
2809 5' -57.3 NC_001491.2 + 145563 0.66 0.881229
Target:  5'- gGC-UCCGgccCGGCGGagaagccaUCCCCGcgGGCg -3'
miRNA:   3'- gUGcAGGU---GUUGCCg-------AGGGGCuaCCG- -5'
2809 5' -57.3 NC_001491.2 + 54017 0.66 0.881229
Target:  5'- uGCGUCCAgcGCGGCgagCCcagaCCGAcGGUu -3'
miRNA:   3'- gUGCAGGUguUGCCGa--GG----GGCUaCCG- -5'
2809 5' -57.3 NC_001491.2 + 46467 0.66 0.881229
Target:  5'- gGCGUCCACAACGGgUUCCg------ -3'
miRNA:   3'- gUGCAGGUGUUGCCgAGGGgcuaccg -5'
2809 5' -57.3 NC_001491.2 + 123502 0.66 0.881229
Target:  5'- gUACG-CCGCGGCGGCUgC---GUGGCg -3'
miRNA:   3'- -GUGCaGGUGUUGCCGAgGggcUACCG- -5'
2809 5' -57.3 NC_001491.2 + 1901 0.66 0.881229
Target:  5'- gACG-CCGC-GCGGgUCCUgGGUGGg -3'
miRNA:   3'- gUGCaGGUGuUGCCgAGGGgCUACCg -5'
2809 5' -57.3 NC_001491.2 + 69929 0.66 0.874188
Target:  5'- aUACGgugCCACAACcGCUUCUauaacgCGAUGGUu -3'
miRNA:   3'- -GUGCa--GGUGUUGcCGAGGG------GCUACCG- -5'
2809 5' -57.3 NC_001491.2 + 145379 0.66 0.874188
Target:  5'- aGCGgcgCCGgAGCGGCagcUCUUCGGggUGGCg -3'
miRNA:   3'- gUGCa--GGUgUUGCCG---AGGGGCU--ACCG- -5'
2809 5' -57.3 NC_001491.2 + 42096 0.66 0.874188
Target:  5'- gGCGgcuucCCGCAGCGGCUauaCCGGcaauuuucUGGUa -3'
miRNA:   3'- gUGCa----GGUGUUGCCGAgg-GGCU--------ACCG- -5'
2809 5' -57.3 NC_001491.2 + 146312 0.66 0.866937
Target:  5'- cCAUGUCCGCGuaGGCgCgCCGGaGGCu -3'
miRNA:   3'- -GUGCAGGUGUugCCGaGgGGCUaCCG- -5'
2809 5' -57.3 NC_001491.2 + 143180 0.66 0.859482
Target:  5'- aCACGUCCGCAcgAgGGCgCCCUcGUGuGUu -3'
miRNA:   3'- -GUGCAGGUGU--UgCCGaGGGGcUAC-CG- -5'
2809 5' -57.3 NC_001491.2 + 100917 0.66 0.859482
Target:  5'- uGCGagCuCAGCGGCccUUCCCGGgagUGGCg -3'
miRNA:   3'- gUGCagGuGUUGCCG--AGGGGCU---ACCG- -5'
2809 5' -57.3 NC_001491.2 + 102473 0.66 0.851826
Target:  5'- aGCGUCUAUccACGGUcccucuacUCCCCGGUaaaaugucGGCg -3'
miRNA:   3'- gUGCAGGUGu-UGCCG--------AGGGGCUA--------CCG- -5'
2809 5' -57.3 NC_001491.2 + 118363 0.66 0.851826
Target:  5'- -cCGcCgGCAGCGGCgguccuccuaCCCCGgcGGCu -3'
miRNA:   3'- guGCaGgUGUUGCCGa---------GGGGCuaCCG- -5'
2809 5' -57.3 NC_001491.2 + 89582 0.67 0.843978
Target:  5'- gCGCGcUCCGCAGCGaGCgUCCUC--UGGUg -3'
miRNA:   3'- -GUGC-AGGUGUUGC-CG-AGGGGcuACCG- -5'
2809 5' -57.3 NC_001491.2 + 146563 0.67 0.835943
Target:  5'- gGCGUCCcCGA--GCUCCCUGAgucugaaGGCg -3'
miRNA:   3'- gUGCAGGuGUUgcCGAGGGGCUa------CCG- -5'
2809 5' -57.3 NC_001491.2 + 140106 0.67 0.827728
Target:  5'- aCGCGcUCCGgAGCGGCgccgggccgCCCgCGGaGGCc -3'
miRNA:   3'- -GUGC-AGGUgUUGCCGa--------GGG-GCUaCCG- -5'
2809 5' -57.3 NC_001491.2 + 70052 0.67 0.827728
Target:  5'- -cCG-CCugAcCGGCgCCCCGcUGGCg -3'
miRNA:   3'- guGCaGGugUuGCCGaGGGGCuACCG- -5'
2809 5' -57.3 NC_001491.2 + 137703 0.67 0.810788
Target:  5'- gGCGU-CGCGGCGGCggCCguggaCCGAgcgGGCg -3'
miRNA:   3'- gUGCAgGUGUUGCCGa-GG-----GGCUa--CCG- -5'
2809 5' -57.3 NC_001491.2 + 84770 0.68 0.79322
Target:  5'- uGCG-CCAUAACGaacaUUCCCCaGUGGCg -3'
miRNA:   3'- gUGCaGGUGUUGCc---GAGGGGcUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.