miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2809 5' -57.3 NC_001491.2 + 123223 0.68 0.756459
Target:  5'- gCGCGg-CGCAGCGGgUCCgCCGAguggaagacgGGCa -3'
miRNA:   3'- -GUGCagGUGUUGCCgAGG-GGCUa---------CCG- -5'
2809 5' -57.3 NC_001491.2 + 24293 0.68 0.756459
Target:  5'- aACG-CUGCAcCGGCUCCCaGAggGGCu -3'
miRNA:   3'- gUGCaGGUGUuGCCGAGGGgCUa-CCG- -5'
2809 5' -57.3 NC_001491.2 + 37685 0.68 0.746981
Target:  5'- gGCGUCCACGGgGGCcgaCgCCGcuugGGCa -3'
miRNA:   3'- gUGCAGGUGUUgCCGa--GgGGCua--CCG- -5'
2809 5' -57.3 NC_001491.2 + 137756 0.69 0.740288
Target:  5'- uCACGUCUcccgcccggcgggcgGCGggcgcccGCGGgUCCCCGGggcggGGCg -3'
miRNA:   3'- -GUGCAGG---------------UGU-------UGCCgAGGGGCUa----CCG- -5'
2809 5' -57.3 NC_001491.2 + 144314 0.69 0.717995
Target:  5'- gGCuUCCGCGcCGaGCUCCgCCGA-GGCa -3'
miRNA:   3'- gUGcAGGUGUuGC-CGAGG-GGCUaCCG- -5'
2809 5' -57.3 NC_001491.2 + 121425 0.69 0.717995
Target:  5'- gCACGccCCGC-ACGGCUgUCCGuggGGCa -3'
miRNA:   3'- -GUGCa-GGUGuUGCCGAgGGGCua-CCG- -5'
2809 5' -57.3 NC_001491.2 + 115480 0.7 0.638193
Target:  5'- uCGCGgcccgCUGCAGCGGCcCCCCGGcccgggacGGCg -3'
miRNA:   3'- -GUGCa----GGUGUUGCCGaGGGGCUa-------CCG- -5'
2809 5' -57.3 NC_001491.2 + 38660 0.71 0.628112
Target:  5'- gCGCGUCgCGC-GCGcCUCCCUGGUGcGCg -3'
miRNA:   3'- -GUGCAG-GUGuUGCcGAGGGGCUAC-CG- -5'
2809 5' -57.3 NC_001491.2 + 137624 0.71 0.618034
Target:  5'- gACGgccgCCgccgcgGCAGCGGCcgCCCCGG-GGCg -3'
miRNA:   3'- gUGCa---GG------UGUUGCCGa-GGGGCUaCCG- -5'
2809 5' -57.3 NC_001491.2 + 95158 0.71 0.607967
Target:  5'- uGCGUCCA---UGGCUauaaCCCGggGGCa -3'
miRNA:   3'- gUGCAGGUguuGCCGAg---GGGCuaCCG- -5'
2809 5' -57.3 NC_001491.2 + 146205 0.71 0.577898
Target:  5'- gCGCGUucccggCCGCcAUGGCgUCCCCGAUguggGGCa -3'
miRNA:   3'- -GUGCA------GGUGuUGCCG-AGGGGCUA----CCG- -5'
2809 5' -57.3 NC_001491.2 + 70529 0.72 0.52861
Target:  5'- cCACGauguuUCCGCcuuGCGGUUCCCUggguagGGUGGCa -3'
miRNA:   3'- -GUGC-----AGGUGu--UGCCGAGGGG------CUACCG- -5'
2809 5' -57.3 NC_001491.2 + 56837 0.73 0.49033
Target:  5'- aCGCGUCCAUcuuuguccgucuGugGGUUCCCCGcgacguagggGGCg -3'
miRNA:   3'- -GUGCAGGUG------------UugCCGAGGGGCua--------CCG- -5'
2809 5' -57.3 NC_001491.2 + 116991 0.73 0.471677
Target:  5'- uCugGgcccugCCACAcGCGGCcgCCUCGGUGGCc -3'
miRNA:   3'- -GugCa-----GGUGU-UGCCGa-GGGGCUACCG- -5'
2809 5' -57.3 NC_001491.2 + 123421 0.75 0.376247
Target:  5'- uGCGUCCGCcGGCGGCgucUCCCCGAUcccgagccgGGUc -3'
miRNA:   3'- gUGCAGGUG-UUGCCG---AGGGGCUA---------CCG- -5'
2809 5' -57.3 NC_001491.2 + 141648 0.8 0.192017
Target:  5'- gCGCGUgcCCGCGA-GGCUCCCCGgcGGCu -3'
miRNA:   3'- -GUGCA--GGUGUUgCCGAGGGGCuaCCG- -5'
2809 5' -57.3 NC_001491.2 + 140290 1.1 0.001965
Target:  5'- cCACGUCCACAACGGCUCCCCGAUGGCc -3'
miRNA:   3'- -GUGCAGGUGUUGCCGAGGGGCUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.