miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2809 5' -57.3 NC_001491.2 + 1901 0.66 0.881229
Target:  5'- gACG-CCGC-GCGGgUCCUgGGUGGg -3'
miRNA:   3'- gUGCaGGUGuUGCCgAGGGgCUACCg -5'
2809 5' -57.3 NC_001491.2 + 24293 0.68 0.756459
Target:  5'- aACG-CUGCAcCGGCUCCCaGAggGGCu -3'
miRNA:   3'- gUGCaGGUGUuGCCGAGGGgCUa-CCG- -5'
2809 5' -57.3 NC_001491.2 + 37685 0.68 0.746981
Target:  5'- gGCGUCCACGGgGGCcgaCgCCGcuugGGCa -3'
miRNA:   3'- gUGCAGGUGUUgCCGa--GgGGCua--CCG- -5'
2809 5' -57.3 NC_001491.2 + 38660 0.71 0.628112
Target:  5'- gCGCGUCgCGC-GCGcCUCCCUGGUGcGCg -3'
miRNA:   3'- -GUGCAG-GUGuUGCcGAGGGGCUAC-CG- -5'
2809 5' -57.3 NC_001491.2 + 42096 0.66 0.874188
Target:  5'- gGCGgcuucCCGCAGCGGCUauaCCGGcaauuuucUGGUa -3'
miRNA:   3'- gUGCa----GGUGUUGCCGAgg-GGCU--------ACCG- -5'
2809 5' -57.3 NC_001491.2 + 46467 0.66 0.881229
Target:  5'- gGCGUCCACAACGGgUUCCg------ -3'
miRNA:   3'- gUGCAGGUGUUGCCgAGGGgcuaccg -5'
2809 5' -57.3 NC_001491.2 + 54017 0.66 0.881229
Target:  5'- uGCGUCCAgcGCGGCgagCCcagaCCGAcGGUu -3'
miRNA:   3'- gUGCAGGUguUGCCGa--GG----GGCUaCCG- -5'
2809 5' -57.3 NC_001491.2 + 56837 0.73 0.49033
Target:  5'- aCGCGUCCAUcuuuguccgucuGugGGUUCCCCGcgacguagggGGCg -3'
miRNA:   3'- -GUGCAGGUG------------UugCCGAGGGGCua--------CCG- -5'
2809 5' -57.3 NC_001491.2 + 69929 0.66 0.874188
Target:  5'- aUACGgugCCACAACcGCUUCUauaacgCGAUGGUu -3'
miRNA:   3'- -GUGCa--GGUGUUGcCGAGGG------GCUACCG- -5'
2809 5' -57.3 NC_001491.2 + 70052 0.67 0.827728
Target:  5'- -cCG-CCugAcCGGCgCCCCGcUGGCg -3'
miRNA:   3'- guGCaGGugUuGCCGaGGGGCuACCG- -5'
2809 5' -57.3 NC_001491.2 + 70529 0.72 0.52861
Target:  5'- cCACGauguuUCCGCcuuGCGGUUCCCUggguagGGUGGCa -3'
miRNA:   3'- -GUGC-----AGGUGu--UGCCGAGGGG------CUACCG- -5'
2809 5' -57.3 NC_001491.2 + 84770 0.68 0.79322
Target:  5'- uGCG-CCAUAACGaacaUUCCCCaGUGGCg -3'
miRNA:   3'- gUGCaGGUGUUGCc---GAGGGGcUACCG- -5'
2809 5' -57.3 NC_001491.2 + 89582 0.67 0.843978
Target:  5'- gCGCGcUCCGCAGCGaGCgUCCUC--UGGUg -3'
miRNA:   3'- -GUGC-AGGUGUUGC-CG-AGGGGcuACCG- -5'
2809 5' -57.3 NC_001491.2 + 91705 0.65 0.88603
Target:  5'- --aGUCUGCGccucuaucgcuagcACGGCgUCCCUGAcgcUGGCc -3'
miRNA:   3'- gugCAGGUGU--------------UGCCG-AGGGGCU---ACCG- -5'
2809 5' -57.3 NC_001491.2 + 95158 0.71 0.607967
Target:  5'- uGCGUCCA---UGGCUauaaCCCGggGGCa -3'
miRNA:   3'- gUGCAGGUguuGCCGAg---GGGCuaCCG- -5'
2809 5' -57.3 NC_001491.2 + 100917 0.66 0.859482
Target:  5'- uGCGagCuCAGCGGCccUUCCCGGgagUGGCg -3'
miRNA:   3'- gUGCagGuGUUGCCG--AGGGGCU---ACCG- -5'
2809 5' -57.3 NC_001491.2 + 102473 0.66 0.851826
Target:  5'- aGCGUCUAUccACGGUcccucuacUCCCCGGUaaaaugucGGCg -3'
miRNA:   3'- gUGCAGGUGu-UGCCG--------AGGGGCUA--------CCG- -5'
2809 5' -57.3 NC_001491.2 + 115480 0.7 0.638193
Target:  5'- uCGCGgcccgCUGCAGCGGCcCCCCGGcccgggacGGCg -3'
miRNA:   3'- -GUGCa----GGUGUUGCCGaGGGGCUa-------CCG- -5'
2809 5' -57.3 NC_001491.2 + 116991 0.73 0.471677
Target:  5'- uCugGgcccugCCACAcGCGGCcgCCUCGGUGGCc -3'
miRNA:   3'- -GugCa-----GGUGU-UGCCGa-GGGGCUACCG- -5'
2809 5' -57.3 NC_001491.2 + 118363 0.66 0.851826
Target:  5'- -cCGcCgGCAGCGGCgguccuccuaCCCCGgcGGCu -3'
miRNA:   3'- guGCaGgUGUUGCCGa---------GGGGCuaCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.