Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28090 | 3' | -55.4 | NC_005887.1 | + | 4457 | 1.09 | 0.000705 |
Target: 5'- gACCCACCGCUUCGAGCGCUUUACGGGc -3' miRNA: 3'- -UGGGUGGCGAAGCUCGCGAAAUGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 23977 | 0.82 | 0.064192 |
Target: 5'- gGCCCACUGC-UCGAGCGCgagGCGGc -3' miRNA: 3'- -UGGGUGGCGaAGCUCGCGaaaUGCCc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 27661 | 0.79 | 0.105097 |
Target: 5'- cGCCCGCCGCgaCGAGCcCgaucgUGCGGGg -3' miRNA: 3'- -UGGGUGGCGaaGCUCGcGaa---AUGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 37852 | 0.76 | 0.184153 |
Target: 5'- uGCCCGCCGUagCGGGCGCgguuguuagGCGGa -3' miRNA: 3'- -UGGGUGGCGaaGCUCGCGaaa------UGCCc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 14636 | 0.72 | 0.296099 |
Target: 5'- gGCCUgACCGCcgUCGAGUGCUacGCGGc -3' miRNA: 3'- -UGGG-UGGCGa-AGCUCGCGAaaUGCCc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 29579 | 0.7 | 0.415269 |
Target: 5'- uCCCGCCGUacgucUUCGuGCGCUgccacuucCGGGu -3' miRNA: 3'- uGGGUGGCG-----AAGCuCGCGAaau-----GCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 7422 | 0.69 | 0.474587 |
Target: 5'- cACCCGCCGCcgccUCGuuuGGCGCUggcgUGCGc- -3' miRNA: 3'- -UGGGUGGCGa---AGC---UCGCGAa---AUGCcc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 42062 | 0.69 | 0.444373 |
Target: 5'- uGCUCGCCGaCUggaucgaCGAGCGCUgucGCGuGGg -3' miRNA: 3'- -UGGGUGGC-GAa------GCUCGCGAaa-UGC-CC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 8706 | 0.69 | 0.454327 |
Target: 5'- gAUCCGCCGCggCGguaAGCGCUUcgucGCGGc -3' miRNA: 3'- -UGGGUGGCGaaGC---UCGCGAAa---UGCCc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 23428 | 0.69 | 0.444373 |
Target: 5'- -gCCGCUGCgagauucggUGAGCGCU--GCGGGc -3' miRNA: 3'- ugGGUGGCGaa-------GCUCGCGAaaUGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 24752 | 0.69 | 0.474587 |
Target: 5'- cAUCUugCGCg-CGAGCGCgggauugACGGGc -3' miRNA: 3'- -UGGGugGCGaaGCUCGCGaaa----UGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 16240 | 0.69 | 0.454327 |
Target: 5'- cGCCgGCCGg--CGAGCGC---ACGGGc -3' miRNA: 3'- -UGGgUGGCgaaGCUCGCGaaaUGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 8705 | 0.69 | 0.484886 |
Target: 5'- aACCCucGCCGag-CGcAGCGCgcgcUACGGGa -3' miRNA: 3'- -UGGG--UGGCgaaGC-UCGCGaa--AUGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 40159 | 0.68 | 0.49529 |
Target: 5'- cGCUCGCCGCgugUGAGCuGCgcgACGGc -3' miRNA: 3'- -UGGGUGGCGaa-GCUCG-CGaaaUGCCc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 428 | 0.68 | 0.49529 |
Target: 5'- cGCCCGCUGUUgcugCGcucgaacccucuGGCGCguguggUGCGGGc -3' miRNA: 3'- -UGGGUGGCGAa---GC------------UCGCGaa----AUGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 33955 | 0.68 | 0.548691 |
Target: 5'- gGCCCACgcgccuuguCGCUUCGucGCGCUcUGCGu- -3' miRNA: 3'- -UGGGUG---------GCGAAGCu-CGCGAaAUGCcc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 25686 | 0.68 | 0.505794 |
Target: 5'- cGCgCGCaCGCUUacggUGAGCGUUUU-CGGGa -3' miRNA: 3'- -UGgGUG-GCGAA----GCUCGCGAAAuGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 28964 | 0.67 | 0.604868 |
Target: 5'- gUCCGCCGCgccggccuucagcgCGAGCGCcaucgcCGGGc -3' miRNA: 3'- uGGGUGGCGaa------------GCUCGCGaaau--GCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 2197 | 0.67 | 0.559602 |
Target: 5'- aGCUCACaCGCggCGAGCGCg--GCGc- -3' miRNA: 3'- -UGGGUG-GCGaaGCUCGCGaaaUGCcc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 39013 | 0.67 | 0.559602 |
Target: 5'- -gCCACCGCgcagUCGAcgGCGgCUUgcUGCGGa -3' miRNA: 3'- ugGGUGGCGa---AGCU--CGC-GAA--AUGCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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