Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28090 | 3' | -55.4 | NC_005887.1 | + | 2197 | 0.67 | 0.559602 |
Target: 5'- aGCUCACaCGCggCGAGCGCg--GCGc- -3' miRNA: 3'- -UGGGUG-GCGaaGCUCGCGaaaUGCcc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 28964 | 0.67 | 0.604868 |
Target: 5'- gUCCGCCGCgccggccuucagcgCGAGCGCcaucgcCGGGc -3' miRNA: 3'- uGGGUGGCGaa------------GCUCGCGaaau--GCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 27721 | 0.66 | 0.61488 |
Target: 5'- cGCCgGCUGCcgUGAGCGCgcccucgACGGc -3' miRNA: 3'- -UGGgUGGCGaaGCUCGCGaaa----UGCCc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 25886 | 0.66 | 0.622677 |
Target: 5'- uCCUGCCGCgcggUCGAGCGCaugcccgcgcgcacGCGGu -3' miRNA: 3'- uGGGUGGCGa---AGCUCGCGaaa-----------UGCCc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 40964 | 0.66 | 0.648304 |
Target: 5'- gGCCCAUgaUGaa-CGAGCGCgacgcGCGGGa -3' miRNA: 3'- -UGGGUG--GCgaaGCUCGCGaaa--UGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 7669 | 0.66 | 0.659429 |
Target: 5'- cGCCCGCUGCUgcUCGAcaaCGUg--GCGGa -3' miRNA: 3'- -UGGGUGGCGA--AGCUc--GCGaaaUGCCc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 855 | 0.66 | 0.670528 |
Target: 5'- gACUUGCCGU-UCGAGCcgguGCcaUGCGGGa -3' miRNA: 3'- -UGGGUGGCGaAGCUCG----CGaaAUGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 19161 | 0.66 | 0.670528 |
Target: 5'- cGCCCccgGCCGUgaucgCGAGCGCg--ACGa- -3' miRNA: 3'- -UGGG---UGGCGaa---GCUCGCGaaaUGCcc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 14636 | 0.72 | 0.296099 |
Target: 5'- gGCCUgACCGCcgUCGAGUGCUacGCGGc -3' miRNA: 3'- -UGGG-UGGCGa-AGCUCGCGAaaUGCCc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 27661 | 0.79 | 0.105097 |
Target: 5'- cGCCCGCCGCgaCGAGCcCgaucgUGCGGGg -3' miRNA: 3'- -UGGGUGGCGaaGCUCGcGaa---AUGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 24752 | 0.69 | 0.474587 |
Target: 5'- cAUCUugCGCg-CGAGCGCgggauugACGGGc -3' miRNA: 3'- -UGGGugGCGaaGCUCGCGaaa----UGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 33955 | 0.68 | 0.548691 |
Target: 5'- gGCCCACgcgccuuguCGCUUCGucGCGCUcUGCGu- -3' miRNA: 3'- -UGGGUG---------GCGAAGCu-CGCGAaAUGCcc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 4457 | 1.09 | 0.000705 |
Target: 5'- gACCCACCGCUUCGAGCGCUUUACGGGc -3' miRNA: 3'- -UGGGUGGCGAAGCUCGCGAAAUGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 25686 | 0.68 | 0.505794 |
Target: 5'- cGCgCGCaCGCUUacggUGAGCGUUUU-CGGGa -3' miRNA: 3'- -UGgGUG-GCGAA----GCUCGCGAAAuGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 23428 | 0.69 | 0.444373 |
Target: 5'- -gCCGCUGCgagauucggUGAGCGCU--GCGGGc -3' miRNA: 3'- ugGGUGGCGaa-------GCUCGCGAaaUGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 41904 | 0.67 | 0.581593 |
Target: 5'- cGCaCCACaCGCgcagagggUUCGAGCGCagcaacaGCGGGc -3' miRNA: 3'- -UG-GGUG-GCG--------AAGCUCGCGaaa----UGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 8705 | 0.69 | 0.484886 |
Target: 5'- aACCCucGCCGag-CGcAGCGCgcgcUACGGGa -3' miRNA: 3'- -UGGG--UGGCgaaGC-UCGCGaa--AUGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 7422 | 0.69 | 0.474587 |
Target: 5'- cACCCGCCGCcgccUCGuuuGGCGCUggcgUGCGc- -3' miRNA: 3'- -UGGGUGGCGa---AGC---UCGCGAa---AUGCcc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 8106 | 0.66 | 0.637164 |
Target: 5'- aGCUCGCCGCgcucgcCGAGgcgcCGCUguuCGGGu -3' miRNA: 3'- -UGGGUGGCGaa----GCUC----GCGAaauGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 2187 | 0.66 | 0.637164 |
Target: 5'- cGCCgGCCGCggugaUCGGGCaGCgcaaaccgAUGGGc -3' miRNA: 3'- -UGGgUGGCGa----AGCUCG-CGaaa-----UGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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