Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28090 | 3' | -55.4 | NC_005887.1 | + | 27721 | 0.66 | 0.61488 |
Target: 5'- cGCCgGCUGCcgUGAGCGCgcccucgACGGc -3' miRNA: 3'- -UGGgUGGCGaaGCUCGCGaaa----UGCCc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 28964 | 0.67 | 0.604868 |
Target: 5'- gUCCGCCGCgccggccuucagcgCGAGCGCcaucgcCGGGc -3' miRNA: 3'- uGGGUGGCGaa------------GCUCGCGaaau--GCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 29579 | 0.7 | 0.415269 |
Target: 5'- uCCCGCCGUacgucUUCGuGCGCUgccacuucCGGGu -3' miRNA: 3'- uGGGUGGCG-----AAGCuCGCGAaau-----GCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 33955 | 0.68 | 0.548691 |
Target: 5'- gGCCCACgcgccuuguCGCUUCGucGCGCUcUGCGu- -3' miRNA: 3'- -UGGGUG---------GCGAAGCu-CGCGAaAUGCcc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 37852 | 0.76 | 0.184153 |
Target: 5'- uGCCCGCCGUagCGGGCGCgguuguuagGCGGa -3' miRNA: 3'- -UGGGUGGCGaaGCUCGCGaaa------UGCCc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 39013 | 0.67 | 0.559602 |
Target: 5'- -gCCACCGCgcagUCGAcgGCGgCUUgcUGCGGa -3' miRNA: 3'- ugGGUGGCGa---AGCU--CGC-GAA--AUGCCc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 40159 | 0.68 | 0.49529 |
Target: 5'- cGCUCGCCGCgugUGAGCuGCgcgACGGc -3' miRNA: 3'- -UGGGUGGCGaa-GCUCG-CGaaaUGCCc -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 40964 | 0.66 | 0.648304 |
Target: 5'- gGCCCAUgaUGaa-CGAGCGCgacgcGCGGGa -3' miRNA: 3'- -UGGGUG--GCgaaGCUCGCGaaa--UGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 41904 | 0.67 | 0.581593 |
Target: 5'- cGCaCCACaCGCgcagagggUUCGAGCGCagcaacaGCGGGc -3' miRNA: 3'- -UG-GGUG-GCG--------AAGCUCGCGaaa----UGCCC- -5' |
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28090 | 3' | -55.4 | NC_005887.1 | + | 42062 | 0.69 | 0.444373 |
Target: 5'- uGCUCGCCGaCUggaucgaCGAGCGCUgucGCGuGGg -3' miRNA: 3'- -UGGGUGGC-GAa------GCUCGCGAaa-UGC-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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