miRNA display CGI


Results 61 - 80 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 23419 0.67 0.473404
Target:  5'- cCGCC-GACGGCCGCuGCgagauucggugagCGCUGCGGg -3'
miRNA:   3'- -GCGGaUUGUUGGCG-CGg------------GCGAUGCCg -5'
28090 5' -57.5 NC_005887.1 + 29417 0.67 0.477453
Target:  5'- gGCUUGcuGCGGCagggaCGCGCUCGCgaaacCGGCg -3'
miRNA:   3'- gCGGAU--UGUUG-----GCGCGGGCGau---GCCG- -5'
28090 5' -57.5 NC_005887.1 + 1581 0.67 0.477453
Target:  5'- cCGCCggcucGGCGGCgCGCGgCgCGCcaACGGCg -3'
miRNA:   3'- -GCGGa----UUGUUG-GCGCgG-GCGa-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 12528 0.67 0.484581
Target:  5'- aCGCCUcuGGC-GCCGCGCacacccgcagacuuCCaGCUACuGGCc -3'
miRNA:   3'- -GCGGA--UUGuUGGCGCG--------------GG-CGAUG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 25482 0.67 0.487652
Target:  5'- uGCCUGuCGAgC-CGUCCGCgccGCGGUa -3'
miRNA:   3'- gCGGAUuGUUgGcGCGGGCGa--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 41529 0.67 0.487652
Target:  5'- gGCC--GCGAUCGCGCgaGC-AUGGCu -3'
miRNA:   3'- gCGGauUGUUGGCGCGggCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 322 0.67 0.487652
Target:  5'- cCGCCUuguACGcAUCGCGCgCCGCgGCGa- -3'
miRNA:   3'- -GCGGAu--UGU-UGGCGCG-GGCGaUGCcg -5'
28090 5' -57.5 NC_005887.1 + 20074 0.67 0.467362
Target:  5'- gGCC-GACGAgaaauCCGauCGCCUGCUGCGcGCc -3'
miRNA:   3'- gCGGaUUGUU-----GGC--GCGGGCGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 14767 0.67 0.466359
Target:  5'- aCGCUcGACGGCgcgcuCGCGCuguacuuCCGCUGCGuGCu -3'
miRNA:   3'- -GCGGaUUGUUG-----GCGCG-------GGCGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 31629 0.67 0.457381
Target:  5'- uCGCCaucgAACAgcggcACCGCGCgguccaUCGCguucgACGGCu -3'
miRNA:   3'- -GCGGa---UUGU-----UGGCGCG------GGCGa----UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 29056 0.67 0.457381
Target:  5'- aCGCCUGGcCGAUCugguucaGCGCCUGCgccuuugugucgauCGGCa -3'
miRNA:   3'- -GCGGAUU-GUUGG-------CGCGGGCGau------------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 23909 0.67 0.457381
Target:  5'- uCGCCUGcgucgaGAUCGCGCCgaucagcgucgUGCUgacgACGGCg -3'
miRNA:   3'- -GCGGAUug----UUGGCGCGG-----------GCGA----UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 31028 0.67 0.457381
Target:  5'- gGCCgucGCGguuGCgGCGCUCGCUGCcgagccGGCc -3'
miRNA:   3'- gCGGau-UGU---UGgCGCGGGCGAUG------CCG- -5'
28090 5' -57.5 NC_005887.1 + 30129 0.67 0.457381
Target:  5'- gGUUUGGCGugaaauccGgCGCGCCCGgcGCGGCg -3'
miRNA:   3'- gCGGAUUGU--------UgGCGCGGGCgaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25167 0.67 0.457381
Target:  5'- uGCCgcguGCGGCCGCGUUCGC-GC-GCu -3'
miRNA:   3'- gCGGau--UGUUGGCGCGGGCGaUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 25001 0.68 0.43777
Target:  5'- uGCCgagcguCAGCuCGCGCCgGCggccgcCGGCc -3'
miRNA:   3'- gCGGauu---GUUG-GCGCGGgCGau----GCCG- -5'
28090 5' -57.5 NC_005887.1 + 9621 0.68 0.43777
Target:  5'- uGCCUGaugcGCGACCGgugGCUCGCgauguCGGUg -3'
miRNA:   3'- gCGGAU----UGUUGGCg--CGGGCGau---GCCG- -5'
28090 5' -57.5 NC_005887.1 + 542 0.68 0.43777
Target:  5'- cCGCCgcGC-GCCGCGCCgGaUACaGCg -3'
miRNA:   3'- -GCGGauUGuUGGCGCGGgCgAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 12740 0.68 0.43777
Target:  5'- gCGCU---CGAUCGCGCCgCGCUGCaacGCg -3'
miRNA:   3'- -GCGGauuGUUGGCGCGG-GCGAUGc--CG- -5'
28090 5' -57.5 NC_005887.1 + 15269 0.68 0.43777
Target:  5'- uGCUgcGCGGCgaGCGUCCGC--CGGCg -3'
miRNA:   3'- gCGGauUGUUGg-CGCGGGCGauGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.