miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 17246 0.68 0.43777
Target:  5'- gGCCgGACAACCGguCGCgaaauCCGacgGCGGCg -3'
miRNA:   3'- gCGGaUUGUUGGC--GCG-----GGCga-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 19343 0.68 0.43777
Target:  5'- cCGCCUcGCAGaaGCGaCCgGCgucgaucaGCGGCa -3'
miRNA:   3'- -GCGGAuUGUUggCGC-GGgCGa-------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 7808 0.68 0.428147
Target:  5'- aCGCgCaGACGAagacgaacCCGgGCauCCGCUGCGGCc -3'
miRNA:   3'- -GCG-GaUUGUU--------GGCgCG--GGCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 40656 0.68 0.428147
Target:  5'- uGCCgcGCAGCuUGCGCUCGUgcucGgGGCg -3'
miRNA:   3'- gCGGauUGUUG-GCGCGGGCGa---UgCCG- -5'
28090 5' -57.5 NC_005887.1 + 15192 0.68 0.428147
Target:  5'- aGC---ACAAcCCGCGCCCGUggccguuCGGCc -3'
miRNA:   3'- gCGgauUGUU-GGCGCGGGCGau-----GCCG- -5'
28090 5' -57.5 NC_005887.1 + 542 0.68 0.43777
Target:  5'- cCGCCgcGC-GCCGCGCCgGaUACaGCg -3'
miRNA:   3'- -GCGGauUGuUGGCGCGGgCgAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 15269 0.68 0.43777
Target:  5'- uGCUgcGCGGCgaGCGUCCGC--CGGCg -3'
miRNA:   3'- gCGGauUGUUGg-CGCGGGCGauGCCG- -5'
28090 5' -57.5 NC_005887.1 + 9621 0.68 0.43777
Target:  5'- uGCCUGaugcGCGACCGgugGCUCGCgauguCGGUg -3'
miRNA:   3'- gCGGAU----UGUUGGCg--CGGGCGau---GCCG- -5'
28090 5' -57.5 NC_005887.1 + 25001 0.68 0.43777
Target:  5'- uGCCgagcguCAGCuCGCGCCgGCggccgcCGGCc -3'
miRNA:   3'- gCGGauu---GUUG-GCGCGGgCGau----GCCG- -5'
28090 5' -57.5 NC_005887.1 + 39391 0.68 0.428147
Target:  5'- gGCCggcggcGCAACCGUGgucgcgaCCGCguuCGGCa -3'
miRNA:   3'- gCGGau----UGUUGGCGCg------GGCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 32041 0.68 0.428147
Target:  5'- uGCggGGC-ACCGaCGCCCGCagACGGa -3'
miRNA:   3'- gCGgaUUGuUGGC-GCGGGCGa-UGCCg -5'
28090 5' -57.5 NC_005887.1 + 34696 0.68 0.41865
Target:  5'- aGCagcgGGCGGCCGuCGUCgCGCUuGCGGUg -3'
miRNA:   3'- gCGga--UUGUUGGC-GCGG-GCGA-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 41617 0.68 0.425284
Target:  5'- gGCCggcGCGGCCcgugaggaucugcuGCGUCUGC-GCGGCg -3'
miRNA:   3'- gCGGau-UGUUGG--------------CGCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 32769 0.68 0.41865
Target:  5'- gCGCCauGCAGCCG-GCUCGUgcgcaggauCGGCg -3'
miRNA:   3'- -GCGGauUGUUGGCgCGGGCGau-------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 5149 0.68 0.417707
Target:  5'- uGCCcGACGuCgGCGCgCCGCUgaugcugAUGGCa -3'
miRNA:   3'- gCGGaUUGUuGgCGCG-GGCGA-------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 4489 0.68 0.409282
Target:  5'- uGCCgAACGGCgcgcgcaucgCGCGUCUGCUcgccgacuACGGCg -3'
miRNA:   3'- gCGGaUUGUUG----------GCGCGGGCGA--------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 28721 0.68 0.390944
Target:  5'- uCGUCgAACGACaCGCGCgCGCUAUcGCc -3'
miRNA:   3'- -GCGGaUUGUUG-GCGCGgGCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 37779 0.68 0.41865
Target:  5'- gCGCCUcGGCGgcuuGCUGCGCCUGCaguuccucguCGGUg -3'
miRNA:   3'- -GCGGA-UUGU----UGGCGCGGGCGau--------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 8583 0.68 0.428147
Target:  5'- aGCCcGGCAcGCCGCGCCagauGCUcgugaaggcCGGCg -3'
miRNA:   3'- gCGGaUUGU-UGGCGCGGg---CGAu--------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 12740 0.68 0.43777
Target:  5'- gCGCU---CGAUCGCGCCgCGCUGCaacGCg -3'
miRNA:   3'- -GCGGauuGUUGGCGCGG-GCGAUGc--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.