miRNA display CGI


Results 101 - 120 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 12740 0.68 0.43777
Target:  5'- gCGCU---CGAUCGCGCCgCGCUGCaacGCg -3'
miRNA:   3'- -GCGGauuGUUGGCGCGG-GCGAUGc--CG- -5'
28090 5' -57.5 NC_005887.1 + 542 0.68 0.43777
Target:  5'- cCGCCgcGC-GCCGCGCCgGaUACaGCg -3'
miRNA:   3'- -GCGGauUGuUGGCGCGGgCgAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 25001 0.68 0.43777
Target:  5'- uGCCgagcguCAGCuCGCGCCgGCggccgcCGGCc -3'
miRNA:   3'- gCGGauu---GUUG-GCGCGGgCGau----GCCG- -5'
28090 5' -57.5 NC_005887.1 + 9621 0.68 0.43777
Target:  5'- uGCCUGaugcGCGACCGgugGCUCGCgauguCGGUg -3'
miRNA:   3'- gCGGAU----UGUUGGCg--CGGGCGau---GCCG- -5'
28090 5' -57.5 NC_005887.1 + 25118 0.68 0.390944
Target:  5'- cCGCCguacGCGAUCGUgucccacacGCCCuGCUugcGCGGCg -3'
miRNA:   3'- -GCGGau--UGUUGGCG---------CGGG-CGA---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 8003 0.68 0.400046
Target:  5'- uCGUCUc-CAGCCGUgGCCgGCgccACGGCa -3'
miRNA:   3'- -GCGGAuuGUUGGCG-CGGgCGa--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 39816 0.68 0.390944
Target:  5'- cCGCCcGACAGCgccuUGCGCa-GCgUGCGGCa -3'
miRNA:   3'- -GCGGaUUGUUG----GCGCGggCG-AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 37779 0.68 0.41865
Target:  5'- gCGCCUcGGCGgcuuGCUGCGCCUGCaguuccucguCGGUg -3'
miRNA:   3'- -GCGGA-UUGU----UGGCGCGGGCGau--------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 14355 0.68 0.390944
Target:  5'- aCGCCggccGACGACgCGauucgGCCCGagccgGCGGCg -3'
miRNA:   3'- -GCGGa---UUGUUG-GCg----CGGGCga---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 38267 0.68 0.390944
Target:  5'- uGCCgau---CUGCGCCUGCUugcccgugagcaGCGGCu -3'
miRNA:   3'- gCGGauuguuGGCGCGGGCGA------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27634 0.68 0.390944
Target:  5'- uCGCCUGcGCGAUCGCcgcgcccggcccGCCCGCcgcgACGaGCc -3'
miRNA:   3'- -GCGGAU-UGUUGGCG------------CGGGCGa---UGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 8583 0.68 0.428147
Target:  5'- aGCCcGGCAcGCCGCGCCagauGCUcgugaaggcCGGCg -3'
miRNA:   3'- gCGGaUUGU-UGGCGCGGg---CGAu--------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 15192 0.68 0.428147
Target:  5'- aGC---ACAAcCCGCGCCCGUggccguuCGGCc -3'
miRNA:   3'- gCGgauUGUU-GGCGCGGGCGau-----GCCG- -5'
28090 5' -57.5 NC_005887.1 + 38934 0.68 0.390944
Target:  5'- uGCgUGACAaaGCCGC-CCUGCcaGCGGUa -3'
miRNA:   3'- gCGgAUUGU--UGGCGcGGGCGa-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 40656 0.68 0.428147
Target:  5'- uGCCgcGCAGCuUGCGCUCGUgcucGgGGCg -3'
miRNA:   3'- gCGGauUGUUG-GCGCGGGCGa---UgCCG- -5'
28090 5' -57.5 NC_005887.1 + 27702 0.68 0.41865
Target:  5'- cCGgCgacgGGCAgcACCGCGCCgGCUGCcGUg -3'
miRNA:   3'- -GCgGa---UUGU--UGGCGCGGgCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 40644 0.69 0.373151
Target:  5'- gGCaCUGACGAgCGCGCgCCGaucacCGGCc -3'
miRNA:   3'- gCG-GAUUGUUgGCGCG-GGCgau--GCCG- -5'
28090 5' -57.5 NC_005887.1 + 27039 0.69 0.373151
Target:  5'- gCGC---GCGACCGCGCaCGCUGCcGCc -3'
miRNA:   3'- -GCGgauUGUUGGCGCGgGCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 15230 0.69 0.373151
Target:  5'- uCGCCgacuACAACgGCgGCCCGaaGCaGGCa -3'
miRNA:   3'- -GCGGau--UGUUGgCG-CGGGCgaUG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 30600 0.69 0.373151
Target:  5'- aGCCggaucgcgAGCAACuCGCGCagCGCgucCGGCa -3'
miRNA:   3'- gCGGa-------UUGUUG-GCGCGg-GCGau-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.