miRNA display CGI


Results 61 - 80 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 14981 0.7 0.292695
Target:  5'- aCGCCgcGCAgGCCGCGCaggCCGCa--GGCg -3'
miRNA:   3'- -GCGGauUGU-UGGCGCG---GGCGaugCCG- -5'
28090 5' -57.5 NC_005887.1 + 12042 0.7 0.292695
Target:  5'- cCGUCgaaGACAACacagGCGCCgCGCUGCaGCa -3'
miRNA:   3'- -GCGGa--UUGUUGg---CGCGG-GCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 22963 0.7 0.331129
Target:  5'- aCGCuCUGcgGCAGCUGCGCgaGC-AUGGCg -3'
miRNA:   3'- -GCG-GAU--UGUUGGCGCGggCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 32683 0.7 0.334359
Target:  5'- gCGCUUcGGCAACCGCGUacagcgcacggauagCCGC-GCGGUu -3'
miRNA:   3'- -GCGGA-UUGUUGGCGCG---------------GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 23176 0.7 0.323154
Target:  5'- uGCCUuuCucgUCGCGCUCGCgaucACGGCc -3'
miRNA:   3'- gCGGAuuGuu-GGCGCGGGCGa---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14817 0.7 0.315324
Target:  5'- -aUCUGGCGGCCGCGa-CGCUgAUGGCg -3'
miRNA:   3'- gcGGAUUGUUGGCGCggGCGA-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 2432 0.7 0.307637
Target:  5'- gCGCCgacgaaUGAC-ACCuCGCUgCGCUACGGCg -3'
miRNA:   3'- -GCGG------AUUGuUGGcGCGG-GCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 13514 0.7 0.323154
Target:  5'- uCGCCggcacgGGCAugCGCGCCacgaucgcgaaUGCgauCGGCg -3'
miRNA:   3'- -GCGGa-----UUGUugGCGCGG-----------GCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 30204 0.7 0.307637
Target:  5'- uCGCCggcCAGCCaCGCCgCGUcGCGGCc -3'
miRNA:   3'- -GCGGauuGUUGGcGCGG-GCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 15510 0.7 0.307637
Target:  5'- aCGgCUAccgGCAGaCGCGCCCGCU-CGcGCa -3'
miRNA:   3'- -GCgGAU---UGUUgGCGCGGGCGAuGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 31440 0.7 0.292695
Target:  5'- gGCCggccGACGucauCUGCGCCgGCUGCaGGUg -3'
miRNA:   3'- gCGGa---UUGUu---GGCGCGGgCGAUG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 34245 0.7 0.323154
Target:  5'- gCGCCUcGGCGAgCGCGgCgaGCUGCGcGCg -3'
miRNA:   3'- -GCGGA-UUGUUgGCGCgGg-CGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 42071 0.7 0.323154
Target:  5'- aCGCCacGCAGuucCCGCGCCaCGUcuuuCGGCa -3'
miRNA:   3'- -GCGGauUGUU---GGCGCGG-GCGau--GCCG- -5'
28090 5' -57.5 NC_005887.1 + 14865 0.69 0.339248
Target:  5'- cCGCa--GCAACagCGCGCaCCGC-GCGGCa -3'
miRNA:   3'- -GCGgauUGUUG--GCGCG-GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 15230 0.69 0.373151
Target:  5'- uCGCCgacuACAACgGCgGCCCGaaGCaGGCa -3'
miRNA:   3'- -GCGGau--UGUUGgCG-CGGGCgaUG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 9853 0.69 0.355915
Target:  5'- -aCCUGAacGCCGCGCgCCGCacaucgUACGGUu -3'
miRNA:   3'- gcGGAUUguUGGCGCG-GGCG------AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 4585 0.69 0.359318
Target:  5'- cCGCCgagGCGcagGCCGCGCagaugcaacagaugcUCGCcGCGGCg -3'
miRNA:   3'- -GCGGau-UGU---UGGCGCG---------------GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27039 0.69 0.373151
Target:  5'- gCGC---GCGACCGCGCaCGCUGCcGCc -3'
miRNA:   3'- -GCGgauUGUUGGCGCGgGCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 30600 0.69 0.373151
Target:  5'- aGCCggaucgcgAGCAACuCGCGCagCGCgucCGGCa -3'
miRNA:   3'- gCGGa-------UUGUUG-GCGCGg-GCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 40644 0.69 0.373151
Target:  5'- gGCaCUGACGAgCGCGCgCCGaucacCGGCc -3'
miRNA:   3'- gCG-GAUUGUUgGCGCG-GGCgau--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.