Results 81 - 100 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28090 | 5' | -57.5 | NC_005887.1 | + | 6433 | 0.69 | 0.355915 |
Target: 5'- gGCCgGACGGCCGCGCCgagaucgaagugCGCgaccugaagUACGGg -3' miRNA: 3'- gCGGaUUGUUGGCGCGG------------GCG---------AUGCCg -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 14994 | 0.69 | 0.355915 |
Target: 5'- uGCCgacGCucguCUGCGCgCCGCUGCGcGUg -3' miRNA: 3'- gCGGau-UGuu--GGCGCG-GGCGAUGC-CG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 28148 | 0.69 | 0.381978 |
Target: 5'- cCGcCCUGuccgaGGCCGCGCCCGacagcGCGuGCa -3' miRNA: 3'- -GC-GGAUug---UUGGCGCGGGCga---UGC-CG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 1994 | 0.69 | 0.381978 |
Target: 5'- aCGgCggcACGGCCGCGCUCG--ACGGCc -3' miRNA: 3'- -GCgGau-UGUUGGCGCGGGCgaUGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 10701 | 0.69 | 0.34751 |
Target: 5'- aGCCgucgaacgcgAugGACCGCGCggugCCGCUguucgAUGGCg -3' miRNA: 3'- gCGGa---------UugUUGGCGCG----GGCGA-----UGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 8096 | 0.69 | 0.34751 |
Target: 5'- gCGCgCgcGCAgcucGCCGCGCUCGCcgaGGCg -3' miRNA: 3'- -GCG-GauUGU----UGGCGCGGGCGaugCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 11397 | 0.69 | 0.355915 |
Target: 5'- aGCgCUGGCGGCCG-GCgCCGCcaaGGCa -3' miRNA: 3'- gCG-GAUUGUUGGCgCG-GGCGaugCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 9853 | 0.69 | 0.355915 |
Target: 5'- -aCCUGAacGCCGCGCgCCGCacaucgUACGGUu -3' miRNA: 3'- gcGGAUUguUGGCGCG-GGCG------AUGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 4585 | 0.69 | 0.359318 |
Target: 5'- cCGCCgagGCGcagGCCGCGCagaugcaacagaugcUCGCcGCGGCg -3' miRNA: 3'- -GCGGau-UGU---UGGCGCG---------------GGCGaUGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 406 | 0.69 | 0.364463 |
Target: 5'- gCGCCgcgaaGACGcGCCGCgccGCCCGCUGuuGCu -3' miRNA: 3'- -GCGGa----UUGU-UGGCG---CGGGCGAUgcCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 30600 | 0.69 | 0.373151 |
Target: 5'- aGCCggaucgcgAGCAACuCGCGCagCGCgucCGGCa -3' miRNA: 3'- gCGGa-------UUGUUG-GCGCGg-GCGau-GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 40644 | 0.69 | 0.373151 |
Target: 5'- gGCaCUGACGAgCGCGCgCCGaucacCGGCc -3' miRNA: 3'- gCG-GAUUGUUgGCGCG-GGCgau--GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 15230 | 0.69 | 0.373151 |
Target: 5'- uCGCCgacuACAACgGCgGCCCGaaGCaGGCa -3' miRNA: 3'- -GCGGau--UGUUGgCG-CGGGCgaUG-CCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 27039 | 0.69 | 0.373151 |
Target: 5'- gCGC---GCGACCGCGCaCGCUGCcGCc -3' miRNA: 3'- -GCGgauUGUUGGCGCGgGCGAUGcCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 8710 | 0.69 | 0.34751 |
Target: 5'- uCGCCgAGC-GCaGCGCgCGCUACGGg -3' miRNA: 3'- -GCGGaUUGuUGgCGCGgGCGAUGCCg -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 3011 | 0.69 | 0.346678 |
Target: 5'- gCGCCUG-CGGCCaGCGCCgcgggcaaagccaUGCU-CGGCc -3' miRNA: 3'- -GCGGAUuGUUGG-CGCGG-------------GCGAuGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 40922 | 0.69 | 0.339248 |
Target: 5'- aCGCCUuccAGCAGCuCGCGUucgucuugCCGCUGcCGaGCg -3' miRNA: 3'- -GCGGA---UUGUUG-GCGCG--------GGCGAU-GC-CG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 39763 | 0.69 | 0.339248 |
Target: 5'- cCGCCUuguccGCGuACCGCuCgCCGCUcACGGCc -3' miRNA: 3'- -GCGGAu----UGU-UGGCGcG-GGCGA-UGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 17212 | 0.69 | 0.381978 |
Target: 5'- uGCUcGACGACC-UGCa-GCUGCGGCg -3' miRNA: 3'- gCGGaUUGUUGGcGCGggCGAUGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 14865 | 0.69 | 0.339248 |
Target: 5'- cCGCa--GCAACagCGCGCaCCGC-GCGGCa -3' miRNA: 3'- -GCGgauUGUUG--GCGCG-GGCGaUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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