miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 8710 0.69 0.34751
Target:  5'- uCGCCgAGC-GCaGCGCgCGCUACGGg -3'
miRNA:   3'- -GCGGaUUGuUGgCGCGgGCGAUGCCg -5'
28090 5' -57.5 NC_005887.1 + 26098 0.69 0.34751
Target:  5'- aGCUcGGCGACgGUGCCCGUgcgcucgcCGGCc -3'
miRNA:   3'- gCGGaUUGUUGgCGCGGGCGau------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 9853 0.69 0.355915
Target:  5'- -aCCUGAacGCCGCGCgCCGCacaucgUACGGUu -3'
miRNA:   3'- gcGGAUUguUGGCGCG-GGCG------AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 11397 0.69 0.355915
Target:  5'- aGCgCUGGCGGCCG-GCgCCGCcaaGGCa -3'
miRNA:   3'- gCG-GAUUGUUGGCgCG-GGCGaugCCG- -5'
28090 5' -57.5 NC_005887.1 + 23359 0.69 0.355915
Target:  5'- gGCCUuugguuaGACUGCGCCaUGCUGCcGCg -3'
miRNA:   3'- gCGGAuug----UUGGCGCGG-GCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 6433 0.69 0.355915
Target:  5'- gGCCgGACGGCCGCGCCgagaucgaagugCGCgaccugaagUACGGg -3'
miRNA:   3'- gCGGaUUGUUGGCGCGG------------GCG---------AUGCCg -5'
28090 5' -57.5 NC_005887.1 + 14994 0.69 0.355915
Target:  5'- uGCCgacGCucguCUGCGCgCCGCUGCGcGUg -3'
miRNA:   3'- gCGGau-UGuu--GGCGCG-GGCGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 23163 0.69 0.355915
Target:  5'- cCGCCUGucuccACGcCCGCG-CCGCUcACGGa -3'
miRNA:   3'- -GCGGAU-----UGUuGGCGCgGGCGA-UGCCg -5'
28090 5' -57.5 NC_005887.1 + 4585 0.69 0.359318
Target:  5'- cCGCCgagGCGcagGCCGCGCagaugcaacagaugcUCGCcGCGGCg -3'
miRNA:   3'- -GCGGau-UGU---UGGCGCG---------------GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 19547 0.69 0.362742
Target:  5'- gCGCCgcguagcucgugAACAACaGCGgCCGCgcCGGCg -3'
miRNA:   3'- -GCGGa-----------UUGUUGgCGCgGGCGauGCCG- -5'
28090 5' -57.5 NC_005887.1 + 406 0.69 0.364463
Target:  5'- gCGCCgcgaaGACGcGCCGCgccGCCCGCUGuuGCu -3'
miRNA:   3'- -GCGGa----UUGU-UGGCG---CGGGCGAUgcCG- -5'
28090 5' -57.5 NC_005887.1 + 9542 0.69 0.364463
Target:  5'- gGCCc-GCuguUCGUGCCCGUgaaGCGGCg -3'
miRNA:   3'- gCGGauUGuu-GGCGCGGGCGa--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 23780 0.69 0.373151
Target:  5'- aCGCCgcgacgAGCAugU-CGCCCGCgaagcCGGCg -3'
miRNA:   3'- -GCGGa-----UUGUugGcGCGGGCGau---GCCG- -5'
28090 5' -57.5 NC_005887.1 + 27039 0.69 0.373151
Target:  5'- gCGC---GCGACCGCGCaCGCUGCcGCc -3'
miRNA:   3'- -GCGgauUGUUGGCGCGgGCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 30600 0.69 0.373151
Target:  5'- aGCCggaucgcgAGCAACuCGCGCagCGCgucCGGCa -3'
miRNA:   3'- gCGGa-------UUGUUG-GCGCGg-GCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 40644 0.69 0.373151
Target:  5'- gGCaCUGACGAgCGCGCgCCGaucacCGGCc -3'
miRNA:   3'- gCG-GAUUGUUgGCGCG-GGCgau--GCCG- -5'
28090 5' -57.5 NC_005887.1 + 15230 0.69 0.373151
Target:  5'- uCGCCgacuACAACgGCgGCCCGaaGCaGGCa -3'
miRNA:   3'- -GCGGau--UGUUGgCG-CGGGCgaUG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 1994 0.69 0.381978
Target:  5'- aCGgCggcACGGCCGCGCUCG--ACGGCc -3'
miRNA:   3'- -GCgGau-UGUUGGCGCGGGCgaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 28148 0.69 0.381978
Target:  5'- cCGcCCUGuccgaGGCCGCGCCCGacagcGCGuGCa -3'
miRNA:   3'- -GC-GGAUug---UUGGCGCGGGCga---UGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 17212 0.69 0.381978
Target:  5'- uGCUcGACGACC-UGCa-GCUGCGGCg -3'
miRNA:   3'- gCGGaUUGUUGGcGCGggCGAUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.