miRNA display CGI


Results 101 - 120 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 25118 0.68 0.390944
Target:  5'- cCGCCguacGCGAUCGUgucccacacGCCCuGCUugcGCGGCg -3'
miRNA:   3'- -GCGGau--UGUUGGCG---------CGGG-CGA---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 28721 0.68 0.390944
Target:  5'- uCGUCgAACGACaCGCGCgCGCUAUcGCc -3'
miRNA:   3'- -GCGGaUUGUUG-GCGCGgGCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 39816 0.68 0.390944
Target:  5'- cCGCCcGACAGCgccuUGCGCa-GCgUGCGGCa -3'
miRNA:   3'- -GCGGaUUGUUG----GCGCGggCG-AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27634 0.68 0.390944
Target:  5'- uCGCCUGcGCGAUCGCcgcgcccggcccGCCCGCcgcgACGaGCc -3'
miRNA:   3'- -GCGGAU-UGUUGGCG------------CGGGCGa---UGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 14355 0.68 0.390944
Target:  5'- aCGCCggccGACGACgCGauucgGCCCGagccgGCGGCg -3'
miRNA:   3'- -GCGGa---UUGUUG-GCg----CGGGCga---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 38267 0.68 0.390944
Target:  5'- uGCCgau---CUGCGCCUGCUugcccgugagcaGCGGCu -3'
miRNA:   3'- gCGGauuguuGGCGCGGGCGA------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 38934 0.68 0.390944
Target:  5'- uGCgUGACAaaGCCGC-CCUGCcaGCGGUa -3'
miRNA:   3'- gCGgAUUGU--UGGCGcGGGCGa-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 16015 0.68 0.400046
Target:  5'- gCGCacc-CGGCCaGCGCCgGCcACGGCc -3'
miRNA:   3'- -GCGgauuGUUGG-CGCGGgCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 41342 0.68 0.400046
Target:  5'- aGCCgguguACAGCgCGCGCaCgGCggcCGGCa -3'
miRNA:   3'- gCGGau---UGUUG-GCGCG-GgCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 8003 0.68 0.400046
Target:  5'- uCGUCUc-CAGCCGUgGCCgGCgccACGGCa -3'
miRNA:   3'- -GCGGAuuGUUGGCG-CGGgCGa--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 15924 0.68 0.409282
Target:  5'- gGCU--GCAGCgCGCGuuCCCGC-GCGGCc -3'
miRNA:   3'- gCGGauUGUUG-GCGC--GGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 16262 0.68 0.409282
Target:  5'- aCGCCaUGAaacGCCGCGCgggCCGCUgACGcGCu -3'
miRNA:   3'- -GCGG-AUUgu-UGGCGCG---GGCGA-UGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 40344 0.68 0.409282
Target:  5'- uGCCcuGCAuGCCGCGCUCGUaguagcCGGCc -3'
miRNA:   3'- gCGGauUGU-UGGCGCGGGCGau----GCCG- -5'
28090 5' -57.5 NC_005887.1 + 4489 0.68 0.409282
Target:  5'- uGCCgAACGGCgcgcgcaucgCGCGUCUGCUcgccgacuACGGCg -3'
miRNA:   3'- gCGGaUUGUUG----------GCGCGGGCGA--------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 16571 0.68 0.409282
Target:  5'- aGCCgaucuCGACCGgGCCCGCaagcaACuGCa -3'
miRNA:   3'- gCGGauu--GUUGGCgCGGGCGa----UGcCG- -5'
28090 5' -57.5 NC_005887.1 + 5149 0.68 0.417707
Target:  5'- uGCCcGACGuCgGCGCgCCGCUgaugcugAUGGCa -3'
miRNA:   3'- gCGGaUUGUuGgCGCG-GGCGA-------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 18932 0.68 0.41865
Target:  5'- gGCUgcgacgAGCuGAUCGaCGCgCUGCUGCGGCu -3'
miRNA:   3'- gCGGa-----UUG-UUGGC-GCG-GGCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 8842 0.68 0.41865
Target:  5'- uCGCC-GACAagAUCGCGCggaUGCUgaACGGCg -3'
miRNA:   3'- -GCGGaUUGU--UGGCGCGg--GCGA--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 32769 0.68 0.41865
Target:  5'- gCGCCauGCAGCCG-GCUCGUgcgcaggauCGGCg -3'
miRNA:   3'- -GCGGauUGUUGGCgCGGGCGau-------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 16682 0.68 0.41865
Target:  5'- uGaCC-GACGAUgGCGaCgCGCUGCGGCu -3'
miRNA:   3'- gC-GGaUUGUUGgCGC-GgGCGAUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.