Results 81 - 100 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28090 | 5' | -57.5 | NC_005887.1 | + | 25001 | 0.68 | 0.43777 |
Target: 5'- uGCCgagcguCAGCuCGCGCCgGCggccgcCGGCc -3' miRNA: 3'- gCGGauu---GUUG-GCGCGGgCGau----GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 9621 | 0.68 | 0.43777 |
Target: 5'- uGCCUGaugcGCGACCGgugGCUCGCgauguCGGUg -3' miRNA: 3'- gCGGAU----UGUUGGCg--CGGGCGau---GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 542 | 0.68 | 0.43777 |
Target: 5'- cCGCCgcGC-GCCGCGCCgGaUACaGCg -3' miRNA: 3'- -GCGGauUGuUGGCGCGGgCgAUGcCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 40656 | 0.68 | 0.428147 |
Target: 5'- uGCCgcGCAGCuUGCGCUCGUgcucGgGGCg -3' miRNA: 3'- gCGGauUGUUG-GCGCGGGCGa---UgCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 7808 | 0.68 | 0.428147 |
Target: 5'- aCGCgCaGACGAagacgaacCCGgGCauCCGCUGCGGCc -3' miRNA: 3'- -GCG-GaUUGUU--------GGCgCG--GGCGAUGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 8583 | 0.68 | 0.428147 |
Target: 5'- aGCCcGGCAcGCCGCGCCagauGCUcgugaaggcCGGCg -3' miRNA: 3'- gCGGaUUGU-UGGCGCGGg---CGAu--------GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 15192 | 0.68 | 0.428147 |
Target: 5'- aGC---ACAAcCCGCGCCCGUggccguuCGGCc -3' miRNA: 3'- gCGgauUGUU-GGCGCGGGCGau-----GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 27516 | 0.68 | 0.428147 |
Target: 5'- aCGCCc-GCGAaCGUGCCCGCcaucagcgucGCGGCc -3' miRNA: 3'- -GCGGauUGUUgGCGCGGGCGa---------UGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 28956 | 0.68 | 0.428147 |
Target: 5'- cCGCC-GACGuccGCCGCGCCgGCcuucagcGCGaGCg -3' miRNA: 3'- -GCGGaUUGU---UGGCGCGGgCGa------UGC-CG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 24687 | 0.68 | 0.428147 |
Target: 5'- uCGCCaAGCGcggcgaggAUCGUGCCCugcaGCUucACGGCg -3' miRNA: 3'- -GCGGaUUGU--------UGGCGCGGG----CGA--UGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 32041 | 0.68 | 0.428147 |
Target: 5'- uGCggGGC-ACCGaCGCCCGCagACGGa -3' miRNA: 3'- gCGgaUUGuUGGC-GCGGGCGa-UGCCg -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 39391 | 0.68 | 0.428147 |
Target: 5'- gGCCggcggcGCAACCGUGgucgcgaCCGCguuCGGCa -3' miRNA: 3'- gCGGau----UGUUGGCGCg------GGCGau-GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 41617 | 0.68 | 0.425284 |
Target: 5'- gGCCggcGCGGCCcgugaggaucugcuGCGUCUGC-GCGGCg -3' miRNA: 3'- gCGGau-UGUUGG--------------CGCGGGCGaUGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 8842 | 0.68 | 0.41865 |
Target: 5'- uCGCC-GACAagAUCGCGCggaUGCUgaACGGCg -3' miRNA: 3'- -GCGGaUUGU--UGGCGCGg--GCGA--UGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 37779 | 0.68 | 0.41865 |
Target: 5'- gCGCCUcGGCGgcuuGCUGCGCCUGCaguuccucguCGGUg -3' miRNA: 3'- -GCGGA-UUGU----UGGCGCGGGCGau--------GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 27702 | 0.68 | 0.41865 |
Target: 5'- cCGgCgacgGGCAgcACCGCGCCgGCUGCcGUg -3' miRNA: 3'- -GCgGa---UUGU--UGGCGCGGgCGAUGcCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 18932 | 0.68 | 0.41865 |
Target: 5'- gGCUgcgacgAGCuGAUCGaCGCgCUGCUGCGGCu -3' miRNA: 3'- gCGGa-----UUG-UUGGC-GCG-GGCGAUGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 32769 | 0.68 | 0.41865 |
Target: 5'- gCGCCauGCAGCCG-GCUCGUgcgcaggauCGGCg -3' miRNA: 3'- -GCGGauUGUUGGCgCGGGCGau-------GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 34696 | 0.68 | 0.41865 |
Target: 5'- aGCagcgGGCGGCCGuCGUCgCGCUuGCGGUg -3' miRNA: 3'- gCGga--UUGUUGGC-GCGG-GCGA-UGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 16682 | 0.68 | 0.41865 |
Target: 5'- uGaCC-GACGAUgGCGaCgCGCUGCGGCu -3' miRNA: 3'- gC-GGaUUGUUGgCGC-GgGCGAUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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