miRNA display CGI


Results 61 - 80 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 12528 0.67 0.484581
Target:  5'- aCGCCUcuGGC-GCCGCGCacacccgcagacuuCCaGCUACuGGCc -3'
miRNA:   3'- -GCGGA--UUGuUGGCGCG--------------GG-CGAUG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 12591 0.7 0.292695
Target:  5'- cCGCCgaccCGGCCGCGa-CGCU-CGGCg -3'
miRNA:   3'- -GCGGauu-GUUGGCGCggGCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 12607 0.72 0.22057
Target:  5'- uCGCCgGGCAagACCGUGCaCGC-GCGGCg -3'
miRNA:   3'- -GCGGaUUGU--UGGCGCGgGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 12740 0.68 0.43777
Target:  5'- gCGCU---CGAUCGCGCCgCGCUGCaacGCg -3'
miRNA:   3'- -GCGGauuGUUGGCGCGG-GCGAUGc--CG- -5'
28090 5' -57.5 NC_005887.1 + 12945 0.67 0.487652
Target:  5'- uGCCgcaGCAaGCCGCGa-CGCUACaGCa -3'
miRNA:   3'- gCGGau-UGU-UGGCGCggGCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 12955 0.73 0.214825
Target:  5'- aGCCUGaucGCGACCGCGC-CGC-AUGGg -3'
miRNA:   3'- gCGGAU---UGUUGGCGCGgGCGaUGCCg -5'
28090 5' -57.5 NC_005887.1 + 13369 0.73 0.212563
Target:  5'- aGCCcGGCGAUgGCGCUCGCgcugaaggccggcGCGGCg -3'
miRNA:   3'- gCGGaUUGUUGgCGCGGGCGa------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 13514 0.7 0.323154
Target:  5'- uCGCCggcacgGGCAugCGCGCCacgaucgcgaaUGCgauCGGCg -3'
miRNA:   3'- -GCGGa-----UUGUugGCGCGG-----------GCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 13578 0.67 0.477453
Target:  5'- gGCCgacGACGcgaaggagGCCGCGUacuucaUCGCUGCuGGCa -3'
miRNA:   3'- gCGGa--UUGU--------UGGCGCG------GGCGAUG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 13769 0.77 0.11127
Target:  5'- -aCCUcguCGACCGCGUCCGCgcagcggGCGGCg -3'
miRNA:   3'- gcGGAuu-GUUGGCGCGGGCGa------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 13931 0.67 0.447516
Target:  5'- aGCacgAGCGcCUGCGCgCGCU-CGGCu -3'
miRNA:   3'- gCGga-UUGUuGGCGCGgGCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14014 0.71 0.278327
Target:  5'- gCGCCUccGCAACCGCcgGCgCGCcgcCGGCg -3'
miRNA:   3'- -GCGGAu-UGUUGGCG--CGgGCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 14059 0.71 0.257836
Target:  5'- uCGCCacGAC-GCUGCGCgCGCU-CGGCg -3'
miRNA:   3'- -GCGGa-UUGuUGGCGCGgGCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14210 0.75 0.139168
Target:  5'- gGCCUcgGACAggGCgGCGCCgCGCUGuuCGGCg -3'
miRNA:   3'- gCGGA--UUGU--UGgCGCGG-GCGAU--GCCG- -5'
28090 5' -57.5 NC_005887.1 + 14355 0.68 0.390944
Target:  5'- aCGCCggccGACGACgCGauucgGCCCGagccgGCGGCg -3'
miRNA:   3'- -GCGGa---UUGUUG-GCg----CGGGCga---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14483 0.77 0.099368
Target:  5'- gGCCUcGCGcagAUCGUGCCCGCcGCGGUg -3'
miRNA:   3'- gCGGAuUGU---UGGCGCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14522 0.72 0.244872
Target:  5'- cCGCUU-GCAGgCGCGgCCGUcgGCGGCg -3'
miRNA:   3'- -GCGGAuUGUUgGCGCgGGCGa-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14636 0.72 0.251285
Target:  5'- gGCCUGACcGCCGuCGagUGCUacGCGGCg -3'
miRNA:   3'- gCGGAUUGuUGGC-GCggGCGA--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14682 0.71 0.28544
Target:  5'- uGCCccgcACGAUCGgGCUCGUcGCGGCg -3'
miRNA:   3'- gCGGau--UGUUGGCgCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14767 0.67 0.466359
Target:  5'- aCGCUcGACGGCgcgcuCGCGCuguacuuCCGCUGCGuGCu -3'
miRNA:   3'- -GCGGaUUGUUG-----GCGCG-------GGCGAUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.