miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 14817 0.7 0.315324
Target:  5'- -aUCUGGCGGCCGCGa-CGCUgAUGGCg -3'
miRNA:   3'- gcGGAUUGUUGGCGCggGCGA-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14865 0.69 0.339248
Target:  5'- cCGCa--GCAACagCGCGCaCCGC-GCGGCa -3'
miRNA:   3'- -GCGgauUGUUG--GCGCG-GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14981 0.7 0.292695
Target:  5'- aCGCCgcGCAgGCCGCGCaggCCGCa--GGCg -3'
miRNA:   3'- -GCGGauUGU-UGGCGCG---GGCGaugCCG- -5'
28090 5' -57.5 NC_005887.1 + 14994 0.69 0.355915
Target:  5'- uGCCgacGCucguCUGCGCgCCGCUGCGcGUg -3'
miRNA:   3'- gCGGau-UGuu--GGCGCG-GGCGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 15192 0.68 0.428147
Target:  5'- aGC---ACAAcCCGCGCCCGUggccguuCGGCc -3'
miRNA:   3'- gCGgauUGUU-GGCGCGGGCGau-----GCCG- -5'
28090 5' -57.5 NC_005887.1 + 15230 0.69 0.373151
Target:  5'- uCGCCgacuACAACgGCgGCCCGaaGCaGGCa -3'
miRNA:   3'- -GCGGau--UGUUGgCG-CGGGCgaUG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 15269 0.68 0.43777
Target:  5'- uGCUgcGCGGCgaGCGUCCGC--CGGCg -3'
miRNA:   3'- gCGGauUGUUGg-CGCGGGCGauGCCG- -5'
28090 5' -57.5 NC_005887.1 + 15373 0.66 0.528344
Target:  5'- aCGCCcgAGCAggucgacGCCGCGCUgauCGCgcGCGGg -3'
miRNA:   3'- -GCGGa-UUGU-------UGGCGCGG---GCGa-UGCCg -5'
28090 5' -57.5 NC_005887.1 + 15510 0.7 0.307637
Target:  5'- aCGgCUAccgGCAGaCGCGCCCGCU-CGcGCa -3'
miRNA:   3'- -GCgGAU---UGUUgGCGCGGGCGAuGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 15640 0.7 0.331129
Target:  5'- uGUCgAGCugcCCGCGgCCGCgcgACGGCu -3'
miRNA:   3'- gCGGaUUGuu-GGCGCgGGCGa--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 15924 0.68 0.409282
Target:  5'- gGCU--GCAGCgCGCGuuCCCGC-GCGGCc -3'
miRNA:   3'- gCGGauUGUUG-GCGC--GGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 16015 0.68 0.400046
Target:  5'- gCGCacc-CGGCCaGCGCCgGCcACGGCc -3'
miRNA:   3'- -GCGgauuGUUGG-CGCGGgCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 16262 0.68 0.409282
Target:  5'- aCGCCaUGAaacGCCGCGCgggCCGCUgACGcGCu -3'
miRNA:   3'- -GCGG-AUUgu-UGGCGCG---GGCGA-UGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 16571 0.68 0.409282
Target:  5'- aGCCgaucuCGACCGgGCCCGCaagcaACuGCa -3'
miRNA:   3'- gCGGauu--GUUGGCgCGGGCGa----UGcCG- -5'
28090 5' -57.5 NC_005887.1 + 16682 0.68 0.41865
Target:  5'- uGaCC-GACGAUgGCGaCgCGCUGCGGCu -3'
miRNA:   3'- gC-GGaUUGUUGgCGC-GgGCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 16810 0.71 0.264526
Target:  5'- aGCU--ACGAaCGCGCaCCGCUcgGCGGCg -3'
miRNA:   3'- gCGGauUGUUgGCGCG-GGCGA--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 17028 0.71 0.264526
Target:  5'- uGCUUGGCAACggaucggaUGCGCagcggcaCGCUugGGCg -3'
miRNA:   3'- gCGGAUUGUUG--------GCGCGg------GCGAugCCG- -5'
28090 5' -57.5 NC_005887.1 + 17212 0.69 0.381978
Target:  5'- uGCUcGACGACC-UGCa-GCUGCGGCg -3'
miRNA:   3'- gCGGaUUGUUGGcGCGggCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 17246 0.68 0.43777
Target:  5'- gGCCgGACAACCGguCGCgaaauCCGacgGCGGCg -3'
miRNA:   3'- gCGGaUUGUUGGC--GCG-----GGCga-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 17282 0.66 0.548625
Target:  5'- aCGUCgGGCGgcGCCGCGCgCGCaaacgccgguuCGGCg -3'
miRNA:   3'- -GCGGaUUGU--UGGCGCGgGCGau---------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.