miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 32942 0.74 0.178116
Target:  5'- aCGUCUcAACGACCGCGCgaauacguucUCGC-GCGGCg -3'
miRNA:   3'- -GCGGA-UUGUUGGCGCG----------GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 32769 0.68 0.41865
Target:  5'- gCGCCauGCAGCCG-GCUCGUgcgcaggauCGGCg -3'
miRNA:   3'- -GCGGauUGUUGGCgCGGGCGau-------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 32683 0.7 0.334359
Target:  5'- gCGCUUcGGCAACCGCGUacagcgcacggauagCCGC-GCGGUu -3'
miRNA:   3'- -GCGGA-UUGUUGGCGCG---------------GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 32331 0.67 0.467362
Target:  5'- uGCCagcGCGGCCGCGCgugaUGUgguCGGCg -3'
miRNA:   3'- gCGGau-UGUUGGCGCGg---GCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 32041 0.68 0.428147
Target:  5'- uGCggGGC-ACCGaCGCCCGCagACGGa -3'
miRNA:   3'- gCGgaUUGuUGGC-GCGGGCGa-UGCCg -5'
28090 5' -57.5 NC_005887.1 + 31826 0.66 0.518834
Target:  5'- uGCCcuucuuGCcGCCGC-CCCGUuccgaaUACGGCu -3'
miRNA:   3'- gCGGau----UGuUGGCGcGGGCG------AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 31677 0.7 0.292695
Target:  5'- aGCCgu-UAGCCGgGCCgGCUGguucguCGGCa -3'
miRNA:   3'- gCGGauuGUUGGCgCGGgCGAU------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 31629 0.67 0.457381
Target:  5'- uCGCCaucgAACAgcggcACCGCGCgguccaUCGCguucgACGGCu -3'
miRNA:   3'- -GCGGa---UUGU-----UGGCGCG------GGCGa----UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 31440 0.7 0.292695
Target:  5'- gGCCggccGACGucauCUGCGCCgGCUGCaGGUg -3'
miRNA:   3'- gCGGa---UUGUu---GGCGCGGgCGAUG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 31028 0.67 0.457381
Target:  5'- gGCCgucGCGguuGCgGCGCUCGCUGCcgagccGGCc -3'
miRNA:   3'- gCGGau-UGU---UGgCGCGGGCGAUG------CCG- -5'
28090 5' -57.5 NC_005887.1 + 30950 0.66 0.540054
Target:  5'- uGCCuUGGCGgcGCCGgcCGCCagCGCUcCGGCu -3'
miRNA:   3'- gCGG-AUUGU--UGGC--GCGG--GCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 30788 0.72 0.251285
Target:  5'- aGCCcgauuccGCGACCGcCGCgCGCUGCGcGCc -3'
miRNA:   3'- gCGGau-----UGUUGGC-GCGgGCGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 30600 0.69 0.373151
Target:  5'- aGCCggaucgcgAGCAACuCGCGCagCGCgucCGGCa -3'
miRNA:   3'- gCGGa-------UUGUUG-GCGCGg-GCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 30490 0.67 0.447516
Target:  5'- gGCCcguGCGuugcgcACCGCaaaacugcaucaGCCCGCguagGCGGCc -3'
miRNA:   3'- gCGGau-UGU------UGGCG------------CGGGCGa---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 30204 0.7 0.307637
Target:  5'- uCGCCggcCAGCCaCGCCgCGUcGCGGCc -3'
miRNA:   3'- -GCGGauuGUUGGcGCGG-GCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 30129 0.67 0.457381
Target:  5'- gGUUUGGCGugaaauccGgCGCGCCCGgcGCGGCg -3'
miRNA:   3'- gCGGAUUGU--------UgGCGCGGGCgaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 29920 0.66 0.518834
Target:  5'- gGUCcaucGCGAUCGCGCgCGC-GCGGUg -3'
miRNA:   3'- gCGGau--UGUUGGCGCGgGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 29716 0.66 0.536851
Target:  5'- uCGCCgucGCGucgcaggaucacgcGCCGCGCgUGC-ACGGUc -3'
miRNA:   3'- -GCGGau-UGU--------------UGGCGCGgGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 29461 0.66 0.518834
Target:  5'- uCGCCgu---GCCGaucaGCUCGCgcACGGCa -3'
miRNA:   3'- -GCGGauuguUGGCg---CGGGCGa-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 29417 0.67 0.477453
Target:  5'- gGCUUGcuGCGGCagggaCGCGCUCGCgaaacCGGCg -3'
miRNA:   3'- gCGGAU--UGUUG-----GCGCGGGCGau---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.