miRNA display CGI


Results 61 - 80 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 29171 0.78 0.086177
Target:  5'- gGCCUGcuCGACCGCuCCCGCUgucugcgcgcgcGCGGCa -3'
miRNA:   3'- gCGGAUu-GUUGGCGcGGGCGA------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 29056 0.67 0.457381
Target:  5'- aCGCCUGGcCGAUCugguucaGCGCCUGCgccuuugugucgauCGGCa -3'
miRNA:   3'- -GCGGAUU-GUUGG-------CGCGGGCGau------------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 28956 0.68 0.428147
Target:  5'- cCGCC-GACGuccGCCGCGCCgGCcuucagcGCGaGCg -3'
miRNA:   3'- -GCGGaUUGU---UGGCGCGGgCGa------UGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 28721 0.68 0.390944
Target:  5'- uCGUCgAACGACaCGCGCgCGCUAUcGCc -3'
miRNA:   3'- -GCGGaUUGUUG-GCGCGgGCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 28328 0.73 0.209209
Target:  5'- aGCCUGuugucgGCGuCUGCGCCgGC-GCGGCa -3'
miRNA:   3'- gCGGAU------UGUuGGCGCGGgCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 28316 0.66 0.518834
Target:  5'- uCGUCUca-GGCUGCGCCgGCggcgcgcCGGCg -3'
miRNA:   3'- -GCGGAuugUUGGCGCGGgCGau-----GCCG- -5'
28090 5' -57.5 NC_005887.1 + 28199 0.66 0.550774
Target:  5'- gCGCC--GCAucaGCGCCgCGCgucuCGGCg -3'
miRNA:   3'- -GCGGauUGUuggCGCGG-GCGau--GCCG- -5'
28090 5' -57.5 NC_005887.1 + 28148 0.69 0.381978
Target:  5'- cCGcCCUGuccgaGGCCGCGCCCGacagcGCGuGCa -3'
miRNA:   3'- -GC-GGAUug---UUGGCGCGGGCga---UGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 28001 0.67 0.451448
Target:  5'- uGCCcGGCAcgcugcuucacgaucGCCGCGuucaCCUGCUuguCGGCg -3'
miRNA:   3'- gCGGaUUGU---------------UGGCGC----GGGCGAu--GCCG- -5'
28090 5' -57.5 NC_005887.1 + 27825 0.81 0.05756
Target:  5'- gCGCCgccGACGGCCGCGCCUGCaaGCGGa -3'
miRNA:   3'- -GCGGa--UUGUUGGCGCGGGCGa-UGCCg -5'
28090 5' -57.5 NC_005887.1 + 27787 0.72 0.251285
Target:  5'- gCGCCaUGACGACgGCGCCgaCGCa--GGCg -3'
miRNA:   3'- -GCGG-AUUGUUGgCGCGG--GCGaugCCG- -5'
28090 5' -57.5 NC_005887.1 + 27702 0.68 0.41865
Target:  5'- cCGgCgacgGGCAgcACCGCGCCgGCUGCcGUg -3'
miRNA:   3'- -GCgGa---UUGU--UGGCGCGGgCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 27634 0.68 0.390944
Target:  5'- uCGCCUGcGCGAUCGCcgcgcccggcccGCCCGCcgcgACGaGCc -3'
miRNA:   3'- -GCGGAU-UGUUGGCG------------CGGGCGa---UGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 27516 0.68 0.428147
Target:  5'- aCGCCc-GCGAaCGUGCCCGCcaucagcgucGCGGCc -3'
miRNA:   3'- -GCGGauUGUUgGCGCGGGCGa---------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27483 0.71 0.271356
Target:  5'- uGCCgcGCgGugCGCGCUguUGCUGCGGUg -3'
miRNA:   3'- gCGGauUG-UugGCGCGG--GCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27363 0.73 0.193115
Target:  5'- aCGCCU-GCGGCCuGCgcgGCCUGC-GCGGCg -3'
miRNA:   3'- -GCGGAuUGUUGG-CG---CGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27332 0.76 0.11771
Target:  5'- gGCCacguCGACUGCGCCaCGCgcaGCGGCg -3'
miRNA:   3'- gCGGauu-GUUGGCGCGG-GCGa--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27079 0.72 0.226446
Target:  5'- uCGCCggcgGACGcucGCCGCGCagCaCUGCGGCu -3'
miRNA:   3'- -GCGGa---UUGU---UGGCGCGg-GcGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27039 0.69 0.373151
Target:  5'- gCGC---GCGACCGCGCaCGCUGCcGCc -3'
miRNA:   3'- -GCGgauUGUUGGCGCGgGCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 26944 0.7 0.331129
Target:  5'- gCGCgUcGACGAuCCGCuGCCCGCgcgcgaucagcGCGGCg -3'
miRNA:   3'- -GCGgA-UUGUU-GGCG-CGGGCGa----------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.