miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 26903 0.67 0.467362
Target:  5'- uGCCgagaAGCUGCGCCCGagucGCuGGCc -3'
miRNA:   3'- gCGGauugUUGGCGCGGGCga--UG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 26741 0.67 0.467362
Target:  5'- cCGCCUGcuGCGcgacgcccgugcGCUGCGUCUcaGCUuCGGCg -3'
miRNA:   3'- -GCGGAU--UGU------------UGGCGCGGG--CGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 26524 0.66 0.505218
Target:  5'- gCGCCUGcaguuucaggucguGCAcCuCGUGCCaCGgUGCGGUg -3'
miRNA:   3'- -GCGGAU--------------UGUuG-GCGCGG-GCgAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 26474 0.7 0.331129
Target:  5'- gCGCaccgAGCuGCUgguGCGCCUGCUGCGcGCg -3'
miRNA:   3'- -GCGga--UUGuUGG---CGCGGGCGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 26415 0.66 0.529405
Target:  5'- uCGagCUGGCGGCCGCGCgggaacgcgCGCUGCaGCc -3'
miRNA:   3'- -GCg-GAUUGUUGGCGCGg--------GCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 26098 0.69 0.34751
Target:  5'- aGCUcGGCGACgGUGCCCGUgcgcucgcCGGCc -3'
miRNA:   3'- gCGGaUUGUUGgCGCGGGCGau------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 26070 0.66 0.508347
Target:  5'- -uCCUGGuCAGCgCGUcagcgGCCCGC-GCGGCg -3'
miRNA:   3'- gcGGAUU-GUUG-GCG-----CGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25855 0.66 0.525167
Target:  5'- gGCCUgcGACAucGCCGaccaGCCCGCcggauccugccgcGCGGUc -3'
miRNA:   3'- gCGGA--UUGU--UGGCg---CGGGCGa------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25482 0.67 0.487652
Target:  5'- uGCCUGuCGAgC-CGUCCGCgccGCGGUa -3'
miRNA:   3'- gCGGAUuGUUgGcGCGGGCGa--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25391 0.66 0.540054
Target:  5'- uCGCC-GAC-AUUGcCGCCCGC-GCGGUu -3'
miRNA:   3'- -GCGGaUUGuUGGC-GCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25167 0.67 0.457381
Target:  5'- uGCCgcguGCGGCCGCGUUCGC-GC-GCu -3'
miRNA:   3'- gCGGau--UGUUGGCGCGGGCGaUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 25118 0.68 0.390944
Target:  5'- cCGCCguacGCGAUCGUgucccacacGCCCuGCUugcGCGGCg -3'
miRNA:   3'- -GCGGau--UGUUGGCG---------CGGG-CGA---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25053 0.66 0.529405
Target:  5'- gCGCCg---AACCgGCGUuuGCgcgcGCGGCg -3'
miRNA:   3'- -GCGGauugUUGG-CGCGggCGa---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25001 0.68 0.43777
Target:  5'- uGCCgagcguCAGCuCGCGCCgGCggccgcCGGCc -3'
miRNA:   3'- gCGGauu---GUUG-GCGCGGgCGau----GCCG- -5'
28090 5' -57.5 NC_005887.1 + 24687 0.68 0.428147
Target:  5'- uCGCCaAGCGcggcgaggAUCGUGCCCugcaGCUucACGGCg -3'
miRNA:   3'- -GCGGaUUGU--------UGGCGCGGG----CGA--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 24612 0.72 0.226446
Target:  5'- aGCCgcGCGGCCGUGCCgaGCgucuugaagaACGGCa -3'
miRNA:   3'- gCGGauUGUUGGCGCGGg-CGa---------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 23909 0.67 0.457381
Target:  5'- uCGCCUGcgucgaGAUCGCGCCgaucagcgucgUGCUgacgACGGCg -3'
miRNA:   3'- -GCGGAUug----UUGGCGCGG-----------GCGA----UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 23780 0.69 0.373151
Target:  5'- aCGCCgcgacgAGCAugU-CGCCCGCgaagcCGGCg -3'
miRNA:   3'- -GCGGa-----UUGUugGcGCGGGCGau---GCCG- -5'
28090 5' -57.5 NC_005887.1 + 23419 0.67 0.473404
Target:  5'- cCGCC-GACGGCCGCuGCgagauucggugagCGCUGCGGg -3'
miRNA:   3'- -GCGGaUUGUUGGCG-CGg------------GCGAUGCCg -5'
28090 5' -57.5 NC_005887.1 + 23359 0.69 0.355915
Target:  5'- gGCCUuugguuaGACUGCGCCaUGCUGCcGCg -3'
miRNA:   3'- gCGGAuug----UUGGCGCGG-GCGAUGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.