miRNA display CGI


Results 101 - 120 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 23287 0.67 0.447516
Target:  5'- uGCC--GCAGcCCGCGCcgaagaacaacgCCGCacUGCGGCc -3'
miRNA:   3'- gCGGauUGUU-GGCGCG------------GGCG--AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 23229 0.66 0.518834
Target:  5'- aCGCC-GACGGCaCGCGa--GCgGCGGCg -3'
miRNA:   3'- -GCGGaUUGUUG-GCGCgggCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 23176 0.7 0.323154
Target:  5'- uGCCUuuCucgUCGCGCUCGCgaucACGGCc -3'
miRNA:   3'- gCGGAuuGuu-GGCGCGGGCGa---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 23163 0.69 0.355915
Target:  5'- cCGCCUGucuccACGcCCGCG-CCGCUcACGGa -3'
miRNA:   3'- -GCGGAU-----UGUuGGCGCgGGCGA-UGCCg -5'
28090 5' -57.5 NC_005887.1 + 22963 0.7 0.331129
Target:  5'- aCGCuCUGcgGCAGCUGCGCgaGC-AUGGCg -3'
miRNA:   3'- -GCG-GAU--UGUUGGCGCGggCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 20074 0.67 0.467362
Target:  5'- gGCC-GACGAgaaauCCGauCGCCUGCUGCGcGCc -3'
miRNA:   3'- gCGGaUUGUU-----GGC--GCGGGCGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 19547 0.69 0.362742
Target:  5'- gCGCCgcguagcucgugAACAACaGCGgCCGCgcCGGCg -3'
miRNA:   3'- -GCGGa-----------UUGUUGgCGCgGGCGauGCCG- -5'
28090 5' -57.5 NC_005887.1 + 19454 0.66 0.555081
Target:  5'- gCGCCUGAUAGauGCGCCaccagCGCgcgaggaucugauaGCGGCc -3'
miRNA:   3'- -GCGGAUUGUUggCGCGG-----GCGa-------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 19343 0.68 0.43777
Target:  5'- cCGCCUcGCAGaaGCGaCCgGCgucgaucaGCGGCa -3'
miRNA:   3'- -GCGGAuUGUUggCGC-GGgCGa-------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 19112 0.71 0.278327
Target:  5'- gCGCC-GACcGCCGcCGCUCGCgugccguCGGCg -3'
miRNA:   3'- -GCGGaUUGuUGGC-GCGGGCGau-----GCCG- -5'
28090 5' -57.5 NC_005887.1 + 18932 0.68 0.41865
Target:  5'- gGCUgcgacgAGCuGAUCGaCGCgCUGCUGCGGCu -3'
miRNA:   3'- gCGGa-----UUG-UUGGC-GCG-GGCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 18084 0.67 0.467362
Target:  5'- uCGCgCUAuccgGCGacucGCCGUGgCUGCUGcCGGCa -3'
miRNA:   3'- -GCG-GAU----UGU----UGGCGCgGGCGAU-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 18004 0.71 0.263851
Target:  5'- aGCCUGACcgaauggGACCGcCGCgCGCuUACGcGCg -3'
miRNA:   3'- gCGGAUUG-------UUGGC-GCGgGCG-AUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 17741 0.66 0.497951
Target:  5'- aCGCUcGGCAcgGCCGCG-CgGCUgAUGGCg -3'
miRNA:   3'- -GCGGaUUGU--UGGCGCgGgCGA-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 17412 0.66 0.507303
Target:  5'- aCGUCggcGGCAuggcgaagaacAUCGCGCUcgucgagCGCUACGGCc -3'
miRNA:   3'- -GCGGa--UUGU-----------UGGCGCGG-------GCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 17389 0.66 0.508347
Target:  5'- -cCCUcGCGGCCGCGCgCaagGCGGCc -3'
miRNA:   3'- gcGGAuUGUUGGCGCGgGcgaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 17282 0.66 0.548625
Target:  5'- aCGUCgGGCGgcGCCGCGCgCGCaaacgccgguuCGGCg -3'
miRNA:   3'- -GCGGaUUGU--UGGCGCGgGCGau---------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 17246 0.68 0.43777
Target:  5'- gGCCgGACAACCGguCGCgaaauCCGacgGCGGCg -3'
miRNA:   3'- gCGGaUUGUUGGC--GCG-----GGCga-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 17212 0.69 0.381978
Target:  5'- uGCUcGACGACC-UGCa-GCUGCGGCg -3'
miRNA:   3'- gCGGaUUGUUGGcGCGggCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 17028 0.71 0.264526
Target:  5'- uGCUUGGCAACggaucggaUGCGCagcggcaCGCUugGGCg -3'
miRNA:   3'- gCGGAUUGUUG--------GCGCGg------GCGAugCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.