Results 61 - 80 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28090 | 5' | -57.5 | NC_005887.1 | + | 14014 | 0.71 | 0.278327 |
Target: 5'- gCGCCUccGCAACCGCcgGCgCGCcgcCGGCg -3' miRNA: 3'- -GCGGAu-UGUUGGCG--CGgGCGau-GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 9231 | 0.71 | 0.28544 |
Target: 5'- gGuCCUAGCgAACUGCGCCgCGU--CGGCg -3' miRNA: 3'- gC-GGAUUG-UUGGCGCGG-GCGauGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 14817 | 0.7 | 0.315324 |
Target: 5'- -aUCUGGCGGCCGCGa-CGCUgAUGGCg -3' miRNA: 3'- gcGGAUUGUUGGCGCggGCGA-UGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 10011 | 0.7 | 0.318438 |
Target: 5'- uCGCCgaccacaucacgcGCGGCCGCGCUgGCacgaacaGCGGCa -3' miRNA: 3'- -GCGGau-----------UGUUGGCGCGGgCGa------UGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 23176 | 0.7 | 0.323154 |
Target: 5'- uGCCUuuCucgUCGCGCUCGCgaucACGGCc -3' miRNA: 3'- gCGGAuuGuu-GGCGCGGGCGa---UGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 13514 | 0.7 | 0.323154 |
Target: 5'- uCGCCggcacgGGCAugCGCGCCacgaucgcgaaUGCgauCGGCg -3' miRNA: 3'- -GCGGa-----UUGUugGCGCGG-----------GCGau-GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 22963 | 0.7 | 0.331129 |
Target: 5'- aCGCuCUGcgGCAGCUGCGCgaGC-AUGGCg -3' miRNA: 3'- -GCG-GAU--UGUUGGCGCGggCGaUGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 32683 | 0.7 | 0.334359 |
Target: 5'- gCGCUUcGGCAACCGCGUacagcgcacggauagCCGC-GCGGUu -3' miRNA: 3'- -GCGGA-UUGUUGGCGCG---------------GGCGaUGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 14865 | 0.69 | 0.339248 |
Target: 5'- cCGCa--GCAACagCGCGCaCCGC-GCGGCa -3' miRNA: 3'- -GCGgauUGUUG--GCGCG-GGCGaUGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 3011 | 0.69 | 0.346678 |
Target: 5'- gCGCCUG-CGGCCaGCGCCgcgggcaaagccaUGCU-CGGCc -3' miRNA: 3'- -GCGGAUuGUUGG-CGCGG-------------GCGAuGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 7115 | 0.7 | 0.315324 |
Target: 5'- gGUCUAACGagGCgGgGCggCGCUGCGGCg -3' miRNA: 3'- gCGGAUUGU--UGgCgCGg-GCGAUGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 2432 | 0.7 | 0.307637 |
Target: 5'- gCGCCgacgaaUGAC-ACCuCGCUgCGCUACGGCg -3' miRNA: 3'- -GCGG------AUUGuUGGcGCGG-GCGAUGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 14682 | 0.71 | 0.28544 |
Target: 5'- uGCCccgcACGAUCGgGCUCGUcGCGGCg -3' miRNA: 3'- gCGGau--UGUUGGCgCGGGCGaUGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 40911 | 0.71 | 0.28544 |
Target: 5'- cCGCCgaaGGCuACCGCGCgCGCaccgaguuCGGCa -3' miRNA: 3'- -GCGGa--UUGuUGGCGCGgGCGau------GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 3612 | 0.7 | 0.292695 |
Target: 5'- gCGCCa---GGCCGCGCagCGCUuCGGCc -3' miRNA: 3'- -GCGGauugUUGGCGCGg-GCGAuGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 31677 | 0.7 | 0.292695 |
Target: 5'- aGCCgu-UAGCCGgGCCgGCUGguucguCGGCa -3' miRNA: 3'- gCGGauuGUUGGCgCGGgCGAU------GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 12591 | 0.7 | 0.292695 |
Target: 5'- cCGCCgaccCGGCCGCGa-CGCU-CGGCg -3' miRNA: 3'- -GCGGauu-GUUGGCGCggGCGAuGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 14981 | 0.7 | 0.292695 |
Target: 5'- aCGCCgcGCAgGCCGCGCaggCCGCa--GGCg -3' miRNA: 3'- -GCGGauUGU-UGGCGCG---GGCGaugCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 12042 | 0.7 | 0.292695 |
Target: 5'- cCGUCgaaGACAACacagGCGCCgCGCUGCaGCa -3' miRNA: 3'- -GCGGa--UUGUUGg---CGCGG-GCGAUGcCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 30204 | 0.7 | 0.307637 |
Target: 5'- uCGCCggcCAGCCaCGCCgCGUcGCGGCc -3' miRNA: 3'- -GCGGauuGUUGGcGCGG-GCGaUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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