miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 30600 0.69 0.373151
Target:  5'- aGCCggaucgcgAGCAACuCGCGCagCGCgucCGGCa -3'
miRNA:   3'- gCGGa-------UUGUUG-GCGCGg-GCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 40644 0.69 0.373151
Target:  5'- gGCaCUGACGAgCGCGCgCCGaucacCGGCc -3'
miRNA:   3'- gCG-GAUUGUUgGCGCG-GGCgau--GCCG- -5'
28090 5' -57.5 NC_005887.1 + 15230 0.69 0.373151
Target:  5'- uCGCCgacuACAACgGCgGCCCGaaGCaGGCa -3'
miRNA:   3'- -GCGGau--UGUUGgCG-CGGGCgaUG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 14865 0.69 0.339248
Target:  5'- cCGCa--GCAACagCGCGCaCCGC-GCGGCa -3'
miRNA:   3'- -GCGgauUGUUG--GCGCG-GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 32683 0.7 0.334359
Target:  5'- gCGCUUcGGCAACCGCGUacagcgcacggauagCCGC-GCGGUu -3'
miRNA:   3'- -GCGGA-UUGUUGGCGCG---------------GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 22963 0.7 0.331129
Target:  5'- aCGCuCUGcgGCAGCUGCGCgaGC-AUGGCg -3'
miRNA:   3'- -GCG-GAU--UGUUGGCGCGggCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 12591 0.7 0.292695
Target:  5'- cCGCCgaccCGGCCGCGa-CGCU-CGGCg -3'
miRNA:   3'- -GCGGauu-GUUGGCGCggGCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14981 0.7 0.292695
Target:  5'- aCGCCgcGCAgGCCGCGCaggCCGCa--GGCg -3'
miRNA:   3'- -GCGGauUGU-UGGCGCG---GGCGaugCCG- -5'
28090 5' -57.5 NC_005887.1 + 12042 0.7 0.292695
Target:  5'- cCGUCgaaGACAACacagGCGCCgCGCUGCaGCa -3'
miRNA:   3'- -GCGGa--UUGUUGg---CGCGG-GCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 30204 0.7 0.307637
Target:  5'- uCGCCggcCAGCCaCGCCgCGUcGCGGCc -3'
miRNA:   3'- -GCGGauuGUUGGcGCGG-GCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 2432 0.7 0.307637
Target:  5'- gCGCCgacgaaUGAC-ACCuCGCUgCGCUACGGCg -3'
miRNA:   3'- -GCGG------AUUGuUGGcGCGG-GCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 7115 0.7 0.315324
Target:  5'- gGUCUAACGagGCgGgGCggCGCUGCGGCg -3'
miRNA:   3'- gCGGAUUGU--UGgCgCGg-GCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14817 0.7 0.315324
Target:  5'- -aUCUGGCGGCCGCGa-CGCUgAUGGCg -3'
miRNA:   3'- gcGGAUUGUUGGCGCggGCGA-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 10011 0.7 0.318438
Target:  5'- uCGCCgaccacaucacgcGCGGCCGCGCUgGCacgaacaGCGGCa -3'
miRNA:   3'- -GCGGau-----------UGUUGGCGCGGgCGa------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 23176 0.7 0.323154
Target:  5'- uGCCUuuCucgUCGCGCUCGCgaucACGGCc -3'
miRNA:   3'- gCGGAuuGuu-GGCGCGGGCGa---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 13514 0.7 0.323154
Target:  5'- uCGCCggcacgGGCAugCGCGCCacgaucgcgaaUGCgauCGGCg -3'
miRNA:   3'- -GCGGa-----UUGUugGCGCGG-----------GCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 8538 0.66 0.549699
Target:  5'- cCGaCCUGACAcCCGCGUgguggccguggguCCGCgcuUGGUg -3'
miRNA:   3'- -GC-GGAUUGUuGGCGCG-------------GGCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 11345 0.66 0.550774
Target:  5'- gGCCUGc--GCCGCGCCaCGCgagagAC-GCa -3'
miRNA:   3'- gCGGAUuguUGGCGCGG-GCGa----UGcCG- -5'
28090 5' -57.5 NC_005887.1 + 40854 0.66 0.550774
Target:  5'- -uCCgcACGGCCGCGCCgCGCgagcGCcGCa -3'
miRNA:   3'- gcGGauUGUUGGCGCGG-GCGa---UGcCG- -5'
28090 5' -57.5 NC_005887.1 + 4492 1.12 0.000264
Target:  5'- cCGCCUAACAACCGCGCCCGCUACGGCg -3'
miRNA:   3'- -GCGGAUUGUUGGCGCGGGCGAUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.