miRNA display CGI


Results 101 - 120 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 37445 0.66 0.508347
Target:  5'- gCGCacgAACAcCuCGCGCCgGCccuCGGCg -3'
miRNA:   3'- -GCGga-UUGUuG-GCGCGGgCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 35950 0.66 0.508347
Target:  5'- gCGCCUugucGACuuCCGCGUaCGCUuCGaGCa -3'
miRNA:   3'- -GCGGA----UUGuuGGCGCGgGCGAuGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 17389 0.66 0.508347
Target:  5'- -cCCUcGCGGCCGCGCgCaagGCGGCc -3'
miRNA:   3'- gcGGAuUGUUGGCGCGgGcgaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 322 0.67 0.487652
Target:  5'- cCGCCUuguACGcAUCGCGCgCCGCgGCGa- -3'
miRNA:   3'- -GCGGAu--UGU-UGGCGCG-GGCGaUGCcg -5'
28090 5' -57.5 NC_005887.1 + 41529 0.67 0.487652
Target:  5'- gGCC--GCGAUCGCGCgaGC-AUGGCu -3'
miRNA:   3'- gCGGauUGUUGGCGCGggCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25482 0.67 0.487652
Target:  5'- uGCCUGuCGAgC-CGUCCGCgccGCGGUa -3'
miRNA:   3'- gCGGAUuGUUgGcGCGGGCGa--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 12528 0.67 0.484581
Target:  5'- aCGCCUcuGGC-GCCGCGCacacccgcagacuuCCaGCUACuGGCc -3'
miRNA:   3'- -GCGGA--UUGuUGGCGCG--------------GG-CGAUG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 29920 0.66 0.518834
Target:  5'- gGUCcaucGCGAUCGCGCgCGC-GCGGUg -3'
miRNA:   3'- gCGGau--UGUUGGCGCGgGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25855 0.66 0.525167
Target:  5'- gGCCUgcGACAucGCCGaccaGCCCGCcggauccugccgcGCGGUc -3'
miRNA:   3'- gCGGA--UUGU--UGGCg---CGGGCGa------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 6626 0.66 0.529405
Target:  5'- gGCC--ACGACCGCGaCCgaGCUGCacGCg -3'
miRNA:   3'- gCGGauUGUUGGCGC-GGg-CGAUGc-CG- -5'
28090 5' -57.5 NC_005887.1 + 40854 0.66 0.550774
Target:  5'- -uCCgcACGGCCGCGCCgCGCgagcGCcGCa -3'
miRNA:   3'- gcGGauUGUUGGCGCGG-GCGa---UGcCG- -5'
28090 5' -57.5 NC_005887.1 + 11345 0.66 0.550774
Target:  5'- gGCCUGc--GCCGCGCCaCGCgagagAC-GCa -3'
miRNA:   3'- gCGGAUuguUGGCGCGG-GCGa----UGcCG- -5'
28090 5' -57.5 NC_005887.1 + 8538 0.66 0.549699
Target:  5'- cCGaCCUGACAcCCGCGUgguggccguggguCCGCgcuUGGUg -3'
miRNA:   3'- -GC-GGAUUGUuGGCGCG-------------GGCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 30950 0.66 0.540054
Target:  5'- uGCCuUGGCGgcGCCGgcCGCCagCGCUcCGGCu -3'
miRNA:   3'- gCGG-AUUGU--UGGC--GCGG--GCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25391 0.66 0.540054
Target:  5'- uCGCC-GAC-AUUGcCGCCCGC-GCGGUu -3'
miRNA:   3'- -GCGGaUUGuUGGC-GCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 10788 0.66 0.540054
Target:  5'- gGUCgaguggGACGACUGCGCgC-CUACGGa -3'
miRNA:   3'- gCGGa-----UUGUUGGCGCGgGcGAUGCCg -5'
28090 5' -57.5 NC_005887.1 + 5913 0.66 0.540054
Target:  5'- gGCCgaagGGCAagaaGCCG-GCCgCGCggaagGCGGUg -3'
miRNA:   3'- gCGGa---UUGU----UGGCgCGG-GCGa----UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 4207 0.66 0.533655
Target:  5'- gGCCUGAUGuccggcauuuucaucGCCGCGguuguuuuCCUGCUcgcgauggagcACGGCa -3'
miRNA:   3'- gCGGAUUGU---------------UGGCGC--------GGGCGA-----------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 33047 0.66 0.529405
Target:  5'- gCGUC-GGCGuuuCgGUGCCCGUaaccUGCGGCg -3'
miRNA:   3'- -GCGGaUUGUu--GgCGCGGGCG----AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25053 0.66 0.529405
Target:  5'- gCGCCg---AACCgGCGUuuGCgcgcGCGGCg -3'
miRNA:   3'- -GCGGauugUUGG-CGCGggCGa---UGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.