Results 41 - 60 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28090 | 5' | -57.5 | NC_005887.1 | + | 31629 | 0.67 | 0.457381 |
Target: 5'- uCGCCaucgAACAgcggcACCGCGCgguccaUCGCguucgACGGCu -3' miRNA: 3'- -GCGGa---UUGU-----UGGCGCG------GGCGa----UGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 7382 | 0.66 | 0.514629 |
Target: 5'- uCGCCUucaucAACAACCugcgcaCGCCCGCcgaguucgaagcCGGCg -3' miRNA: 3'- -GCGGA-----UUGUUGGc-----GCGGGCGau----------GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 11345 | 0.66 | 0.550774 |
Target: 5'- gGCCUGc--GCCGCGCCaCGCgagagAC-GCa -3' miRNA: 3'- gCGGAUuguUGGCGCGG-GCGa----UGcCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 14767 | 0.67 | 0.466359 |
Target: 5'- aCGCUcGACGGCgcgcuCGCGCuguacuuCCGCUGCGuGCu -3' miRNA: 3'- -GCGGaUUGUUG-----GCGCG-------GGCGAUGC-CG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 40854 | 0.66 | 0.550774 |
Target: 5'- -uCCgcACGGCCGCGCCgCGCgagcGCcGCa -3' miRNA: 3'- gcGGauUGUUGGCGCGG-GCGa---UGcCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 18932 | 0.68 | 0.41865 |
Target: 5'- gGCUgcgacgAGCuGAUCGaCGCgCUGCUGCGGCu -3' miRNA: 3'- gCGGa-----UUG-UUGGC-GCG-GGCGAUGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 30950 | 0.66 | 0.540054 |
Target: 5'- uGCCuUGGCGgcGCCGgcCGCCagCGCUcCGGCu -3' miRNA: 3'- gCGG-AUUGU--UGGC--GCGG--GCGAuGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 27702 | 0.68 | 0.41865 |
Target: 5'- cCGgCgacgGGCAgcACCGCGCCgGCUGCcGUg -3' miRNA: 3'- -GCgGa---UUGU--UGGCGCGGgCGAUGcCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 15192 | 0.68 | 0.428147 |
Target: 5'- aGC---ACAAcCCGCGCCCGUggccguuCGGCc -3' miRNA: 3'- gCGgauUGUU-GGCGCGGGCGau-----GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 28956 | 0.68 | 0.428147 |
Target: 5'- cCGCC-GACGuccGCCGCGCCgGCcuucagcGCGaGCg -3' miRNA: 3'- -GCGGaUUGU---UGGCGCGGgCGa------UGC-CG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 19343 | 0.68 | 0.43777 |
Target: 5'- cCGCCUcGCAGaaGCGaCCgGCgucgaucaGCGGCa -3' miRNA: 3'- -GCGGAuUGUUggCGC-GGgCGa-------UGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 25167 | 0.67 | 0.457381 |
Target: 5'- uGCCgcguGCGGCCGCGUUCGC-GC-GCu -3' miRNA: 3'- gCGGau--UGUUGGCGCGGGCGaUGcCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 23909 | 0.67 | 0.457381 |
Target: 5'- uCGCCUGcgucgaGAUCGCGCCgaucagcgucgUGCUgacgACGGCg -3' miRNA: 3'- -GCGGAUug----UUGGCGCGG-----------GCGA----UGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 18084 | 0.67 | 0.467362 |
Target: 5'- uCGCgCUAuccgGCGacucGCCGUGgCUGCUGcCGGCa -3' miRNA: 3'- -GCG-GAU----UGU----UGGCGCgGGCGAU-GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 29417 | 0.67 | 0.477453 |
Target: 5'- gGCUUGcuGCGGCagggaCGCGCUCGCgaaacCGGCg -3' miRNA: 3'- gCGGAU--UGUUG-----GCGCGGGCGau---GCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 41529 | 0.67 | 0.487652 |
Target: 5'- gGCC--GCGAUCGCGCgaGC-AUGGCu -3' miRNA: 3'- gCGGauUGUUGGCGCGggCGaUGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 35950 | 0.66 | 0.508347 |
Target: 5'- gCGCCUugucGACuuCCGCGUaCGCUuCGaGCa -3' miRNA: 3'- -GCGGA----UUGuuGGCGCGgGCGAuGC-CG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 29461 | 0.66 | 0.518834 |
Target: 5'- uCGCCgu---GCCGaucaGCUCGCgcACGGCa -3' miRNA: 3'- -GCGGauuguUGGCg---CGGGCGa-UGCCG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 6626 | 0.66 | 0.529405 |
Target: 5'- gGCC--ACGACCGCGaCCgaGCUGCacGCg -3' miRNA: 3'- gCGGauUGUUGGCGC-GGg-CGAUGc-CG- -5' |
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28090 | 5' | -57.5 | NC_005887.1 | + | 5913 | 0.66 | 0.540054 |
Target: 5'- gGCCgaagGGCAagaaGCCG-GCCgCGCggaagGCGGUg -3' miRNA: 3'- gCGGa---UUGU----UGGCgCGG-GCGa----UGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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