miRNA display CGI


Results 61 - 80 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 23909 0.67 0.457381
Target:  5'- uCGCCUGcgucgaGAUCGCGCCgaucagcgucgUGCUgacgACGGCg -3'
miRNA:   3'- -GCGGAUug----UUGGCGCGG-----------GCGA----UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 28001 0.67 0.451448
Target:  5'- uGCCcGGCAcgcugcuucacgaucGCCGCGuucaCCUGCUuguCGGCg -3'
miRNA:   3'- gCGGaUUGU---------------UGGCGC----GGGCGAu--GCCG- -5'
28090 5' -57.5 NC_005887.1 + 25391 0.66 0.540054
Target:  5'- uCGCC-GAC-AUUGcCGCCCGC-GCGGUu -3'
miRNA:   3'- -GCGGaUUGuUGGC-GCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 4207 0.66 0.533655
Target:  5'- gGCCUGAUGuccggcauuuucaucGCCGCGguuguuuuCCUGCUcgcgauggagcACGGCa -3'
miRNA:   3'- gCGGAUUGU---------------UGGCGC--------GGGCGA-----------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25855 0.66 0.525167
Target:  5'- gGCCUgcGACAucGCCGaccaGCCCGCcggauccugccgcGCGGUc -3'
miRNA:   3'- gCGGA--UUGU--UGGCg---CGGGCGa------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 28316 0.66 0.518834
Target:  5'- uCGUCUca-GGCUGCGCCgGCggcgcgcCGGCg -3'
miRNA:   3'- -GCGGAuugUUGGCGCGGgCGau-----GCCG- -5'
28090 5' -57.5 NC_005887.1 + 17389 0.66 0.508347
Target:  5'- -cCCUcGCGGCCGCGCgCaagGCGGCc -3'
miRNA:   3'- gcGGAuUGUUGGCGCGgGcgaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25482 0.67 0.487652
Target:  5'- uGCCUGuCGAgC-CGUCCGCgccGCGGUa -3'
miRNA:   3'- gCGGAUuGUUgGcGCGGGCGa--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 23419 0.67 0.473404
Target:  5'- cCGCC-GACGGCCGCuGCgagauucggugagCGCUGCGGg -3'
miRNA:   3'- -GCGGaUUGUUGGCG-CGg------------GCGAUGCCg -5'
28090 5' -57.5 NC_005887.1 + 32331 0.67 0.467362
Target:  5'- uGCCagcGCGGCCGCGCgugaUGUgguCGGCg -3'
miRNA:   3'- gCGGau-UGUUGGCGCGg---GCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 14994 0.69 0.355915
Target:  5'- uGCCgacGCucguCUGCGCgCCGCUGCGcGUg -3'
miRNA:   3'- gCGGau-UGuu--GGCGCG-GGCGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 23163 0.69 0.355915
Target:  5'- cCGCCUGucuccACGcCCGCG-CCGCUcACGGa -3'
miRNA:   3'- -GCGGAU-----UGUuGGCGCgGGCGA-UGCCg -5'
28090 5' -57.5 NC_005887.1 + 33636 0.68 0.43777
Target:  5'- gGCC--GCGACgaaGCGCuuaCCGCcGCGGCg -3'
miRNA:   3'- gCGGauUGUUGg--CGCG---GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 24687 0.68 0.428147
Target:  5'- uCGCCaAGCGcggcgaggAUCGUGCCCugcaGCUucACGGCg -3'
miRNA:   3'- -GCGGaUUGU--------UGGCGCGGG----CGA--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27702 0.68 0.41865
Target:  5'- cCGgCgacgGGCAgcACCGCGCCgGCUGCcGUg -3'
miRNA:   3'- -GCgGa---UUGU--UGGCGCGGgCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 18932 0.68 0.41865
Target:  5'- gGCUgcgacgAGCuGAUCGaCGCgCUGCUGCGGCu -3'
miRNA:   3'- gCGGa-----UUG-UUGGC-GCG-GGCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 41342 0.68 0.400046
Target:  5'- aGCCgguguACAGCgCGCGCaCgGCggcCGGCa -3'
miRNA:   3'- gCGGau---UGUUG-GCGCG-GgCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 39816 0.68 0.390944
Target:  5'- cCGCCcGACAGCgccuUGCGCa-GCgUGCGGCa -3'
miRNA:   3'- -GCGGaUUGUUG----GCGCGggCG-AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 38934 0.68 0.390944
Target:  5'- uGCgUGACAaaGCCGC-CCUGCcaGCGGUa -3'
miRNA:   3'- gCGgAUUGU--UGGCGcGGGCGa-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 1994 0.69 0.381978
Target:  5'- aCGgCggcACGGCCGCGCUCG--ACGGCc -3'
miRNA:   3'- -GCgGau-UGUUGGCGCGGGCgaUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.