miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 8583 0.68 0.428147
Target:  5'- aGCCcGGCAcGCCGCGCCagauGCUcgugaaggcCGGCg -3'
miRNA:   3'- gCGGaUUGU-UGGCGCGGg---CGAu--------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 18932 0.68 0.41865
Target:  5'- gGCUgcgacgAGCuGAUCGaCGCgCUGCUGCGGCu -3'
miRNA:   3'- gCGGa-----UUG-UUGGC-GCG-GGCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 15924 0.68 0.409282
Target:  5'- gGCU--GCAGCgCGCGuuCCCGC-GCGGCc -3'
miRNA:   3'- gCGGauUGUUG-GCGC--GGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 39816 0.68 0.390944
Target:  5'- cCGCCcGACAGCgccuUGCGCa-GCgUGCGGCa -3'
miRNA:   3'- -GCGGaUUGUUG----GCGCGggCG-AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 38267 0.68 0.390944
Target:  5'- uGCCgau---CUGCGCCUGCUugcccgugagcaGCGGCu -3'
miRNA:   3'- gCGGauuguuGGCGCGGGCGA------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 9542 0.69 0.364463
Target:  5'- gGCCc-GCuguUCGUGCCCGUgaaGCGGCg -3'
miRNA:   3'- gCGGauUGuu-GGCGCGGGCGa--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 23163 0.69 0.355915
Target:  5'- cCGCCUGucuccACGcCCGCG-CCGCUcACGGa -3'
miRNA:   3'- -GCGGAU-----UGUuGGCGCgGGCGA-UGCCg -5'
28090 5' -57.5 NC_005887.1 + 23909 0.67 0.457381
Target:  5'- uCGCCUGcgucgaGAUCGCGCCgaucagcgucgUGCUgacgACGGCg -3'
miRNA:   3'- -GCGGAUug----UUGGCGCGG-----------GCGA----UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14767 0.67 0.466359
Target:  5'- aCGCUcGACGGCgcgcuCGCGCuguacuuCCGCUGCGuGCu -3'
miRNA:   3'- -GCGGaUUGUUG-----GCGCG-------GGCGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 26741 0.67 0.467362
Target:  5'- cCGCCUGcuGCGcgacgcccgugcGCUGCGUCUcaGCUuCGGCg -3'
miRNA:   3'- -GCGGAU--UGU------------UGGCGCGGG--CGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 33223 0.69 0.337613
Target:  5'- gGCCUGaauaccgaugcgcuuGCGACCagaguaacggcgccgGUGCCCGCgcUGGCa -3'
miRNA:   3'- gCGGAU---------------UGUUGG---------------CGCGGGCGauGCCG- -5'
28090 5' -57.5 NC_005887.1 + 42071 0.7 0.323154
Target:  5'- aCGCCacGCAGuucCCGCGCCaCGUcuuuCGGCa -3'
miRNA:   3'- -GCGGauUGUU---GGCGCGG-GCGau--GCCG- -5'
28090 5' -57.5 NC_005887.1 + 31440 0.7 0.292695
Target:  5'- gGCCggccGACGucauCUGCGCCgGCUGCaGGUg -3'
miRNA:   3'- gCGGa---UUGUu---GGCGCGGgCGAUG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 16810 0.71 0.264526
Target:  5'- aGCU--ACGAaCGCGCaCCGCUcgGCGGCg -3'
miRNA:   3'- gCGGauUGUUgGCGCG-GGCGA--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 30788 0.72 0.251285
Target:  5'- aGCCcgauuccGCGACCGcCGCgCGCUGCGcGCc -3'
miRNA:   3'- gCGGau-----UGUUGGC-GCGgGCGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 25053 0.66 0.529405
Target:  5'- gCGCCg---AACCgGCGUuuGCgcgcGCGGCg -3'
miRNA:   3'- -GCGGauugUUGG-CGCGggCGa---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 29920 0.66 0.518834
Target:  5'- gGUCcaucGCGAUCGCGCgCGC-GCGGUg -3'
miRNA:   3'- gCGGau--UGUUGGCGCGgGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 7382 0.66 0.514629
Target:  5'- uCGCCUucaucAACAACCugcgcaCGCCCGCcgaguucgaagcCGGCg -3'
miRNA:   3'- -GCGGA-----UUGUUGGc-----GCGGGCGau----------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 17389 0.66 0.508347
Target:  5'- -cCCUcGCGGCCGCGCgCaagGCGGCc -3'
miRNA:   3'- gcGGAuUGUUGGCGCGgGcgaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 1581 0.67 0.477453
Target:  5'- cCGCCggcucGGCGGCgCGCGgCgCGCcaACGGCg -3'
miRNA:   3'- -GCGGa----UUGUUG-GCGCgG-GCGa-UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.